UFO01686.5prime Sequence
1109 bp (1005 high quality bases) assembled on 2008-10-17
> UFO01686.5prime
CAGTCGACATGTCCAATCCTCAGCCTAATGTCACCGCCTATCTGGCGACC
CAGAAGAAGACCACCAACAAAGAACTCGCCGCCGAATGGACGCTCATCGA
GGAGCTCTACAATGAAAAACTCTGGAATGAGCTGACCATCAAACTGGTGA
CCTTTGTGCGCCACGAATCCTTGCAGGACGAAACTGCGCTGCTGCAGCTC
TACCAGAATTTCCTGTCCACCTTCGAGACCAAAATAAACCCCTATGGCCT
CATCCAGATTCTCGAGGTGGTGGTTGACAACATCGGTGACAAGAAGGAGG
CCATCGAGTTCTTGGAGAAGATGAAGGACAAGGTGAAGATCTGCGACGAG
GCCGTTTGGTATCTGCAGGTGATGCAGGGTAATCTGTACCTCAGCAACCT
GAACGATCTGAATGCCACCAAGAAGATCATCGAGGAACTGCGTGATGTCC
TAGAGGAAGCGGGTAATGTGACGCCCGTTCACGGCAAATACTACATGCTG
GCATCCCAGTATTATCGGCGAGTGGGCAAGCACAGCGATTACTACCGATG
TGGCCTACAGTTTCTGGGCTGCTCCATGGATGAGTACCCCCGTGATCAAT
GGGCCCAGCAGGCATTCTTCTTGGGTCTGGCTGCTCTCTTGGGCGATGGT
GTCTACAACATAGGCGAATTGCTGGCTCATCCCATTCTTGAGTCGCTTAA
GGGCACGGAAAATGAGTGGCTCATGGAACTTCTTAAAGCCTTCAACACGG
GCGATATTAACAAGTTTAATGACATGAAGAAAATCTGGTCCAAGATTCCC
GATTTGGCTGCCCAGGAGGTCAAGTTGCGCCAGAAGATCTCCCTCCTTTG
CCTCATGGAGATGACCTTCAAGCGCTCAGCCATCGAGCGAGCCATCTCCT
TTACCGACATCGCGCAGAGACCAAACTGCCCGCCAAGGAAGTGGAACTGC
TTATCATGAAGCTCTGGCTTTGGATCTCGTCCGCGGCGAGATGACCAAGT
GCTGGAGTGTAACATGTCTGGGTGCACCACGCGTCTCACCGCAGCAGAAT
GTCGCATGCCAGGACTCTGAACATGGATGGGCGCCCATTACGAACTGGAA
ACTGATGGA
UFO01686.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn9-RA | 1340 | CG10230-RA | 107..1224 | 9..1109 | 5095 | 98 | Plus |
Rpn9-RB | 1578 | CG10230-RB | 217..1334 | 9..1109 | 5095 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23732041..23732573 | 765..233 | 2665 | 100 | Minus |
3R | 32079331 | 3R | 23731751..23731981 | 992..764 | 1055 | 99.1 | Minus |
3R | 32079331 | 3R | 23732627..23732740 | 232..119 | 570 | 100 | Minus |
3R | 32079331 | 3R | 23732796..23732905 | 118..9 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:09:04 has no hits.
UFO01686.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:07 Download gff for
UFO01686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RB | 210..1333 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:49:34 Download gff for
UFO01686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RA | 84..1208 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:38 Download gff for
UFO01686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RB | 210..1333 | 1..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:38 Download gff for
UFO01686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23731620..23731981 | 764..1108 | 93 | <- | Minus |
3R | 23732043..23732573 | 233..763 | 100 | <- | Minus |
3R | 23732627..23732740 | 119..232 | 100 | <- | Minus |
3R | 23732796..23732913 | 1..118 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:07 Download gff for
UFO01686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19558518..19558635 | 1..118 | 97 | | Minus |
arm_3R | 19558349..19558462 | 119..232 | 100 | <- | Minus |
arm_3R | 19557342..19557703 | 764..1108 | 93 | <- | Minus |
arm_3R | 19557765..19558295 | 233..763 | 100 | <- | Minus |