Clone UFO01687 Report

Search the DGRC for UFO01687

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:16
Well:87
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG8460-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01687.5prime Sequence

477 bp (357 high quality bases) assembled on 2008-10-17

> UFO01687.5prime
CAGTCGACATGCGTGCGCCTGATGCGCTCCTGCTCCGCGTCGCTCTCCTG
CTTCTACTGCTGACCACCGTCCGCGGAACCCTCGCCCCGGACAGCCACAA
ATCGAAGAGCAAGACCAAGGAGAGTGCTCTGCGTGGCGGTCCGCAAGACC
AAGATGTTTTCGATCTGGGCTTGGTTAGTCCCGAGCCCCTGGCCAAGGAT
ATCGTGAGCAATCATCGCGGGTACTTCAAGGAGACGGGATTGCGACGCTT
CAATGGCACCACCTTGGGCTATGTGACTCCATGGAACTCGCATGGCTATG
ATGTGGCTAAGATATTTGCCAAGAAGTTCGACATTATCCCGCCGGTTTGG
CTGCAAATTGTTAAGCAGGGAAATTGTTTTTGCCGTACCCGGAACCCATG
AATCCATGCCGGTTGGGTAACCAAGGCCCGGAAAAGGGAAACGGGGCCAT
CCACCAAAGGGTAAGGGTTTCCCCTTT

UFO01687.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8460-RA 1368 CG8460-RA 95..531 3..438 1920 96.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8197287..8197565 3..281 1380 99.6 Plus
2L 23513712 2L 8197632..8197782 282..432 480 90.8 Plus
Blast to na_te.dros performed on 2014-11-28 20:34:34 has no hits.

UFO01687.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:22 Download gff for UFO01687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 93..501 1..409 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:49:46 Download gff for UFO01687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 90..498 1..409 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:02 Download gff for UFO01687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 93..501 1..409 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:02 Download gff for UFO01687.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8197285..8197565 1..281 99 -> Plus
2L 8197632..8197766 282..416 92 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:22 Download gff for UFO01687.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8197285..8197565 1..281 99 -> Plus
arm_2L 8197632..8197766 282..416 92 <- Plus