UFO01688.5prime Sequence
1097 bp (987 high quality bases) assembled on 2008-10-17
> UFO01688.5prime
CAGTCGACATGTACCCGGCGCAACCGGCAAAGGTGGCGTTGGCCGGTCAA
CCGATATCCGCCGGAAAACCACCACGCCACAGCCCTGTTCAGATGAAGTC
TATCCCTTTGCCCGTCTTCGAGCTGCCGGAATACGTGTGCGTGGAGACCA
AGTGGGTGACACGCAAGTACGCGATAGAGAATGGCATTCCAGTGAAAGAA
CTGCATGCCCCGATCACCAATGGAGGCGCTACAGAGTCTCCCAAGAAATC
CGTACAGCAGAAGAGACTCAACGAGGTCACTGGAATGTTTGCGAACGAGG
CTATGGTGCCGCGCAGAGAGCGCGCCATTCAAACAGAGAATGCGGGCACT
AAGGATGCGGGCATTCAATGCCGTCGCGATTCGGAGGAGTGGTATTTACC
AGAGGAACGGCCAAAGGATACCGGTTCTGAGGCCTCCAATTCCGACAAAT
TTCTCACCTACGTGAGCGAGAACACATTCATATTTCCCAACGGCATGATG
GAGTGCGCGGTGTGCGGCGATGTGGCCAAAACCTTGCTGGAGCACCAGAG
CCACATGACCGCGCACTATGGACCTGGTGCTCTGTGCTTTCGCTGTGGTC
AGCGTCTGGACCACCAGAAACAATTGAAGCAACACAGTCTGAGCTGTCCC
GCTCTAGCGCCCAGGAAGTCATCGATGCTCTTTAAATGCCCACATCTACT
CTGCAACGCCATGAGCCACTCAGAGATGCAGTTGCTCAGGCACCTGAGAA
ACCATAGCGGCAGGAAGTGCTACAGATGTCTTCAGTGCAAACGTTACTTC
AAGACCACCACCTCTCTTTTGGTACACCGAAAAAAGAACAGAGTTGTGCC
AAGGCGAAAGTGGTCGTCCTATTTCGCGACACAACGGGTTGCCCAATGGA
AGAGGTGATCCCAGACGTTGCCTCAGTTGCTTGAAGCGTTTCAGCAGCGA
GCGGGTATGCCTGCGGCACCGGAAAACAGTGCATCCTTGGCAGTTAGACG
CTGTCAGGGTCCTCAAGAAGGAGCTAGCAGCTTCTAAACATCGTTGGCGC
CGCGGGCCAGTATTGCTAAACTATCTAATCAATCCTATCACTAGCTA
UFO01688.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33213-RA | 1279 | CG33213-RA | 174..1200 | 5..1026 | 4875 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27918300..27919287 | 991..5 | 4690 | 99 | Minus |
| X | 23542271 | X | 3797624..3798565 | 991..33 | 3165 | 89.6 | Minus |
| X | 23542271 | X | 3798561..3798899 | 361..5 | 940 | 84.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:16:18 has no hits.
UFO01688.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:29 Download gff for
UFO01688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33213-RA | 184..1213 | 1..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:49:54 Download gff for
UFO01688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33213-RA | 156..1185 | 1..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:43 Download gff for
UFO01688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33213-RA | 171..1200 | 1..1026 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:43 Download gff for
UFO01688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27918261..27919290 | 1..1026 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:29 Download gff for
UFO01688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23743983..23745012 | 1..1026 | 98 | | Minus |
