UFO01689.5prime Sequence
1079 bp (993 high quality bases) assembled on 2008-10-17
> UFO01689.5prime
CAGTCGACATGAGCGGCGCTACACAGGAATTTTGTGTACGCTGGAACAGC
CATTTGGGCAGCATTGGAGCTGCTTTTCCGCAGCTGCTAGCAGGCCAGAG
ATTCGTGGATGTAACACTCGCATGCGAAGGCCAACAGGTGCACTGCCATC
GTCTGGTGTTGGCCGCTTGTTCCACCTACTTTGAGGCAATACTAGCGGAG
CATCCTTGCAAGCACCCGGTCATCATATTGCCCAGGGAGATCAAGCTATG
GGAGATCCAGGCGCTTGTGGACTTCATGTACAAGGGAGAGGTCAATGTCA
CGCAAGCCGGTCTTGGCCAGTTGCTTCGCTGTGCCGAACAACTGCAGATT
CGCGGTCTATACGGCTCTGAGGCACCGATAAACTACAAGAAACTCCAGCA
GGCGAGTCTCGAGGCTGCTAAGGATCCAGCTGCAACCACAGCGCGAAGCT
TCAAGCATGTGGACAGCGCGGAAACGGACGATGCAGCCACTAATTCAACC
ACCTCAACAACAATGACCACCTCCTCCGCTCCACCGCTACCGGTTAACCA
TCAGCAACCCACAGTATTGAAGCGCCAGAATCCCGATGCTCGGCAGCAGC
AGCAACAGCAGCAGCAGCAGCAGGTGCAGCAGCGACCCCAGATAAATGGC
AGTAATGCTCAACAGCCATCTAAGGCCACCTCTACGAACGTTTTGGGCAG
CCACTCGAATGCACCAACCGAGGATGACTCCGGCGACGAGGTGCCGAACA
ATTGGAATGCCTACGGGGAGCAATTCGATGATTGCAATATATCTGCGCAA
GCCGTTGACAACAAAATGAATGTCCACCTATCCCTGCAGCAGCGAGGATG
CAAATGCAGCTTCAGCAGCAGCATACTTGGATTCAAATGTTGAGGACGAC
CACAACTATGTGGCCGCTCATGATGAAAACATGACAGCAGTTTTGCGACA
GAGTGCATGCGATCGGGCTATCCCTCAGCCTTGACACTGATCTCGATACA
TCGGCAATACTTCGGAGGACTGACATAGCTCGATCGATGTATCTTCATAT
AACGCGTCGAGTCGAGCATCTCTAGCAAG
UFO01689.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8924-RB | 2575 | CG8924-RB | 637..1700 | 9..1057 | 4965 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15942452..15943285 | 9..842 | 4170 | 100 | Plus |
| X | 23542271 | X | 15943348..15943552 | 845..1039 | 565 | 94.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:33:19 has no hits.
UFO01689.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:36 Download gff for
UFO01689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8924-RB | 630..1725 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:50:04 Download gff for
UFO01689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8924-RA | 800..1895 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:02 Download gff for
UFO01689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8924-RB | 630..1725 | 1..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:02 Download gff for
UFO01689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15942445..15943290 | 1..846 | 99 | -> | Plus |
| X | 15943350..15943599 | 847..1079 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:36 Download gff for
UFO01689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15836478..15837323 | 1..846 | 99 | -> | Plus |
| arm_X | 15837383..15837632 | 847..1079 | 91 | | Plus |
