UFO01703.5prime Sequence
1197 bp (1017 high quality bases) assembled on 2008-10-27
> UFO01703.5prime
CAGTCGACATGCCCGAATTGTGGCTGGTGCGCAGTAAACTGTATCGCGAT
CGCCAGCTGAAGCTCGAATCCTATAGCCGATTATTAGAGCTGCTACGCAC
GACCGATAGCTATGCCAATATCCATACGCTCAAACGTAAGATCAACAATT
TTCGGACCTCGTATCGCCGGGAATTGCGAAAGGTGCTGGATAGTGGGAAC
ACATATAAGCCAACGCTTTGGTATTTCAAAGAACTAGACTTTCTCTATGA
ACTGGAAACCGGTGAACTGCAATTGGAGGGCATAGTGGCCGCCGATCGGG
ATTTGGTTCGAAATTCGAAAGTCCTGCAGAATGAGTCAAATAAAACGATA
ACATTCGGAGCGCAATTGGCGGAACAGGAGGTATCAATGAGCTTTATTGT
GAAGCGAGAAATTGAAGTTGATGAGAATATAACCGAGGATATGCAGCAAT
TGGAGACCGAAGATGTTGACATTATGTCTGATGCCTTTCCACACGAAGAG
GATATGCTACGTCTTGATGCCGTGGGTGATGGCGATGTTGAACCGGAACC
CGAGCCTGATAACGATCCCGAATTGGATAACATGGATGATCATGTTGATG
ATTATCGTAACAATTCATCGGCTGGGAGCATTAAGAACAATGGCTATCAG
CAGCACACCGTATCTTCGCACCAGCAGCATAACGGTGAATCGCAGACTTC
GGATAAATCCGGACGTCGCATCCGTAACCGACGAAGACGCAGTAGCAATG
ACACCGATTACGTTGAAGCGGCGAGAAAGCGTAGAAATGTGGAGACTTCG
AATAGAGATAGAGACTGGCATAGAGAGCGGGATAGGGAGCGAGACAGAAA
GCATGAAAGCGACAGCGAGTACGAGTGCGAGCTGATCGGAAAACGGATGG
CCAGCCACTTCCGGCGTATGCGTCAGATCAGCGACTTTTCGCCGAACGGA
TCATTAGCGGAGGTGTTGGTCTACGGCCGAATGAATCGCCTTTCGTTCGA
GACCCAATTTAGTATGGGTCATAAAGCAAGCTTTCTAGAACATTCGTTTG
GCGCGCGGCCCAGTAATTGTCCATATCCTAATCTAATCTATCAAATTCCA
CTAGCTAGGAATTCTGTCATGACCTGCTTGATTCCCAAATAAACGGCGGG
CACCGGAAGAGCTCTAGGACAATTCCAAAATGATGAATTTCTCGTAG
UFO01703.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4004-RB | 1395 | CG4004-RB | 58..1074 | 9..1025 | 5025 | 99.7 | Plus |
| CG4004-RC | 1288 | CG4004-RC | 404..967 | 462..1025 | 2760 | 99.5 | Plus |
| CG4004-RE | 2237 | CG4004-RE | 739..1302 | 462..1025 | 2760 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12746869..12747432 | 462..1025 | 2710 | 99.5 | Plus |
| X | 23542271 | X | 12745415..12745868 | 9..462 | 2270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:42:21 has no hits.
UFO01703.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:59 Download gff for
UFO01703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RB | 51..1078 | 1..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:14 Download gff for
UFO01703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RB | 51..1078 | 1..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:21 Download gff for
UFO01703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RB | 51..1078 | 1..1030 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:21 Download gff for
UFO01703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12745408..12745867 | 1..461 | 99 | -> | Plus |
| X | 12746869..12747432 | 462..1025 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:14 Download gff for
UFO01703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12639441..12639900 | 1..461 | 99 | -> | Plus |
| arm_X | 12640902..12641465 | 462..1025 | 99 | == | Plus |
