UFO01704.5prime Sequence
1159 bp (1011 high quality bases) assembled on 2008-10-27
> UFO01704.5prime
CAGTCGACATGTTCTCCAACGGATTGCCGTGCAATCTGTCGTTTCCGAGC
TGTCTCAGTGTACCAAAAGACGAGATCGGTAATGAAGAGCTACTGCCATC
CAATATGGGTACTCGCGAGCCTGTTATACTCAATGTCTACGATATGTACT
GGATCAACGAGTACACCACCTCAATCGGCCTGGGCGTATTTCACTCCGGC
GTAGAAGCCTTTGGCACCGAATTCGCATACGGCGGACATCCATTTCCGTT
TACGGGGGTATTCGAGATCTCACCGAGGGATCACGACGAGTTGGGCGATC
AGTTCCAGTTCCGGCAGAGCATCCAAATCGGCTGCACCGACTTTACGTAC
GAGGAGGTGCGACGTATCGTCGAGGAGCTGGGTAATCAGTTCCGTGGCGA
CCGATATCATCTCATGAACAACAATTGCAACCACTTCTCGGGCTCATTAA
CTCAGATACTTTGCGGCCAAGAAATACCCAGCTGGGTCAATCGTCTAGCG
CATTTCAGCTCCTGTGTGCCATTTCTACAAAGATGTTTGCCAAAAGAATG
GCTGACACCGAATGCCTTGCAGCAAAGCATTACCACAATCCAAGAGCGCG
AAGACTCCGACAACAGTCCCCTTGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCGACATGCAGCATCACAAACGGCATGATGACCTGAATC
GCAGCGCATCAGCACCTTGTCGCTTGCGTATATATTTGCCCATGTGAAAC
GGGGGCGAAGAAGTTGTCCATATTGCCGTTATCAAACTGTGACTCACCCA
GGATGGCTGAACGAAAACATTTTCATACCGTAAGAATGGCAGGTTTACCG
TAACGGCCACTTGCAATGTAATCGCGAATCGCTGATCTATCGAGAGATAA
CGGTTCATG
UFO01704.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7222-RB | 1395 | CG7222-RB | 107..721 | 9..623 | 3075 | 100 | Plus |
| CG7222-RA | 1523 | CG7222-RA | 235..849 | 9..623 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10814282..10814591 | 146..455 | 1550 | 100 | Plus |
| 2R | 25286936 | 2R | 10814077..10814214 | 9..146 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 10814872..10814962 | 454..544 | 455 | 100 | Plus |
| 2R | 25286936 | 2R | 10815029..10815107 | 545..623 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:18:47 has no hits.
UFO01704.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:58 Download gff for
UFO01704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7222-RA | 227..847 | 1..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:08 Download gff for
UFO01704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7222-RA | 229..849 | 1..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:10 Download gff for
UFO01704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7222-RA | 229..849 | 1..623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:10 Download gff for
UFO01704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10814071..10814214 | 1..146 | 97 | -> | Plus |
| 2R | 10814283..10814591 | 147..455 | 100 | -> | Plus |
| 2R | 10814874..10814962 | 456..544 | 100 | -> | Plus |
| 2R | 10815029..10815107 | 545..623 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:08 Download gff for
UFO01704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6701576..6701719 | 1..146 | 97 | -> | Plus |
| arm_2R | 6701788..6702096 | 147..455 | 100 | -> | Plus |
| arm_2R | 6702379..6702467 | 456..544 | 100 | -> | Plus |
| arm_2R | 6702534..6702612 | 545..623 | 100 | == | Plus |
