UFO01707.5prime Sequence
1186 bp (1047 high quality bases) assembled on 2008-10-27
> UFO01707.5prime
CAGTCGACATGGCCAACATCCTGGAGAACCAACTGTTCACGGCCGCCAAG
ACCATCGAGCAGCAGCTGGACCAGCAGCTCGACCGCCTGGACAACCTCGA
TTCGGATGACCTAAAGGTCCTGCGGGAGCAGCGGCTCCGCGAAATGAAGG
ACCTGAACAACAAGAAGCAGGAGTGGCTCAGAAACGGTCATGGCACCTAC
ACCGAGCTGGCCGACGAAAAAGAGTTCTTCGAGATGTCGAAAAAGTCGCC
CAACATTGTTTGCCACTTTTACCGCGACAGCACCGAGCGCTGCAAGATCG
TGGACATGCACCTGAAGATCCTCGCGGCCAAGCACGTGGAGGCCAAGTTT
TGCAAGGTGAATGCCGAAAAGACTCCATTCCTCACCCAGCGACTGCGCAT
CAAGGTGATACCCACCATCGCCCTGGTGAAGGACAGCAAGACCAAGGACT
TCATTGTCGGATTCACCGATCTGGGCAACTGCGACGACTTCGCCACCGAA
ATGCTGGAGTGGCGCATCGCCCACTCGGGGGCCATTGACTACAAGGGCGA
TCTGATGCAGCCACCAGATGTGAAACGCAAACCATTCATCAACCGCCCAC
AGAAGACAATACGTGGAGGCTACGACTCGGATGACTCCGATATAGATCTG
GATGACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCG
CCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGAC
ATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGGCCAGCGGCATC
AGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAACGGGGGCG
AAGAAGTTGTCCATATTGGCACGTAAATCAACTGGTGAACTCACCAGGAT
GCTGAACGAAAACAATTCCTATAACCTAGAATGCAGTTCACGTAACGCAA
TCTGGCAATATGTGTGTTGAAACTGCGCGGAAAACT
UFO01707.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4511-RB | 1407 | CG4511-RB | 110..759 | 7..656 | 3250 | 100 | Plus |
| CG4511-RA | 1452 | CG4511-RA | 155..804 | 7..656 | 3250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10855294..10855764 | 186..656 | 2355 | 100 | Plus |
| 3R | 32079331 | 3R | 10854854..10855033 | 7..186 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:35:54 has no hits.
UFO01707.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:56 Download gff for
UFO01707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4511-RA | 146..807 | 1..663 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:45 Download gff for
UFO01707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4511-RA | 148..809 | 1..663 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:49 Download gff for
UFO01707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4511-RA | 148..809 | 1..663 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:49 Download gff for
UFO01707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10854847..10855032 | 1..185 | 97 | -> | Plus |
| 3R | 10855294..10855769 | 186..663 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:45 Download gff for
UFO01707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6680569..6680754 | 1..185 | 97 | -> | Plus |
| arm_3R | 6681016..6681491 | 186..663 | 99 | == | Plus |
