UFO01708.5prime Sequence
1164 bp (1035 high quality bases) assembled on 2008-10-27
> UFO01708.5prime
CAGTCGACATGTCGGACAGCGATACGGACACCGTGGACGAGCTTTTCCAC
CTTGCCACCGAGCATGTGGCCAAGCAGTCAAACAGCATTGGTTCCGCGGA
CCTTTTAATATTTTACGGATACTACAAGCAGGCCACGAATGGCCCCTGCA
AGGAGCAAAGTCCGGGTCTGCTTCAACTGCAGGCCAAGAGCAAGTGGCAG
GCTTGGCGCAATCTGGGAACAATGTCCCAGTCCGCTGCCCGGCAGGCCTA
CGTCCAGAAGCTGCAGGAGCTTCAACCCAACTGGCGGTCCCGGCGCAACC
CAGGCTGGGTCGTTCATTCCATTGAGTCGGTCCCACTGGAGGACCAACGT
TTGGACAGTGAAAAGACCCTGTTTGACCACGTGAAGGAGAACAATCTAGA
CAGGCTGAGGGAACTGCTGCAGCCAAGTGACTTGGTTAAGCTGGACGAGC
ATGGCATGGCGCTCATCCACTGGGCTACCGATCGCAATGCCGTCGAAATC
ATACAGTTCCTGGTGCGGAGTGGGGCCAGTGTAAATCAGCGAGATGCGGA
GCAACAGACTCCGCTGCACTACGCCGCCAGTTGTGGACACTTGGAGGCGC
TCCAATGCCTGTTGGAGCTACACGCCAGCCTGGAGCTACGCGATTCAGAT
GGACAGACTTGTTACGACGTGGCTGACGATGAGCAGATCTGCCAGGTGCT
TCAAACGGAACGGGAACGACTCGCTGGATCCGCGTCCGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCGGCGGCAACCGAGCGTCTGAAC
AAATCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCCGCCCTGCACTCATCGCAGTACTG
TGTAATCATTAAGCATTCTGCGGACATGAAGCCATCCAAACCGCATGATG
AACTGATCGCAGGCGCATCAGCACCTGGTCGCTGCGTATATATTTGGCCA
TGTGAAACCGGGCAGAGTGTCTATTGCCCGTTATCAACCGGGTAAACTCA
CCAAGATGTGCTAT
UFO01708.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33714-RB | 1279 | CG33714-RB | 417..1148 | 6..737 | 3660 | 100 | Plus |
| CG33714-RA | 1278 | CG33714-RA | 416..1147 | 6..737 | 3660 | 100 | Plus |
| CG33713-RB | 1278 | CG33713-RB | 416..1147 | 6..737 | 3660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21318067..21318798 | 737..6 | 3660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:54:32 has no hits.
UFO01708.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:55 Download gff for
UFO01708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33714-RA | 411..1150 | 1..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:31 Download gff for
UFO01708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33713-RB | 411..1150 | 1..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:54 Download gff for
UFO01708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33713-RB | 411..1150 | 1..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:54 Download gff for
UFO01708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21318064..21318799 | 1..741 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:31 Download gff for
UFO01708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21189091..21189826 | 1..741 | 99 | | Minus |
