UFO01714.5prime Sequence
1178 bp (1017 high quality bases) assembled on 2008-10-27
> UFO01714.5prime
CAGTCGACATGTCTGCTACCGAGGGCAAGGTTATCACATGCAAGGCCGCC
GTCGCTTGGGAGGCAAAGAAGCCGCTGGTCATCGAGGATATCGAGGTGGC
GCCGCCCAAGGCTCATGAGGTGCGCATCAAGATCACGGCCACGGGCGTCT
GCCACACGGATGCCTTCACCCTGAGCGGTGCCGATCCGGAGGGCCTGTTC
CCAGTGGTGTTGGGACATGAGGGCGCCGGCATCGTGGAGAGCGTCGGCGA
GGGCGTGACCAACTTCAAGGCTGGCGACCATGTCATCGCTCTCTACATCC
CCCAGTGCAACGAGTGCAAGTTCTGCAAGAGCGGCAAGACGAATCTCTGC
CAAAAGATCCGACTTACCCAGGGCGCTGGAGTCATGCCCGAGGGCACCTC
CCGTCTCAGCTGCAAGGGACAGCAGTTGTTCCACTTCATGGGCACCTCCA
CCTTCGCAGAGTACACCGTAGTGGCCGACATTTCGCTGACAAAGATCAAC
GAAAAGGCGCCGCTGGAGAAAGTCTGCCTGCTGGGGTGCGGCATTTCCAC
AGGCTACGGAGCCGCCCTCAACACTGCCAAGGTGGAAGCCGGTAGCACCT
GCGCTGTTTGGGGCTTGGGAGCTGTGGGCTTGGCCGTGGGTTTGGGCTGC
AAGAAGGCTGGTGCCGGCAAGATCTACGGCATTGACATCAATCCCGACAA
GTTTGAGCTGGCCAAGAAGTTTGGATTCACCGACTTTGTCAACCCCAAGG
ATGTGGCCGACAAGGGTTCGATCCAGAACTACCTGATCGATCTGACCGAT
GGTGGATTCGATTACACCTTCGAATGCATTGGCAATGTGAACACCATGCG
CTCCGCTTTGGAGGCACACACAAGGGTTGGGGCACTTCGGTGGTGATCGG
AGTGGCCGTGCTGACAGGAGATTTCCACGCGACCCTTCCAGCTGGTCGTG
GGTCGCGTGTGAGGTTCGCTTTCGAGCTGCGCCTCCGTTTCCGATGTTCC
CAATTGGTGGAGGACTACTGAGAGATCTGCTGTGACGAGTTCATCACCAC
GACTGCCGCTGTCCGATCAACGAGGCCATCGATCTTGAATGCCAAGGCGA
AGAATATCCGAATCTATAGATGCAAGCCTCACGGAACATGCTTGGCGACG
CGCGCCCCGAGTGAGTGTCATAATCTCT
UFO01714.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fdh-RA | 1337 | CG6598-RA | 107..1203 | 9..1085 | 4870 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10871181..10872027 | 961..118 | 4055 | 99.4 | Minus |
| 3R | 32079331 | 3R | 10872094..10872187 | 121..28 | 455 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:11 has no hits.
UFO01714.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:50 Download gff for
UFO01714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fdh-RA | 106..1213 | 9..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:31 Download gff for
UFO01714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fdh-RA | 107..1214 | 9..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:27 Download gff for
UFO01714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fdh-RA | 107..1214 | 9..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:27 Download gff for
UFO01714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10871029..10872025 | 120..1097 | 97 | <- | Minus |
| 3R | 10872096..10872185 | 30..119 | 98 | <- | Minus |
| 3R | 10872255..10872275 | 9..29 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:31 Download gff for
UFO01714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6696751..6697747 | 120..1097 | 97 | <- | Minus |
| arm_3R | 6697818..6697907 | 30..119 | 98 | <- | Minus |
| arm_3R | 6697977..6697997 | 9..29 | 100 | | Minus |
