UFO01715.5prime Sequence
1159 bp (978 high quality bases) assembled on 2008-10-27
> UFO01715.5prime
CAGTCGACATGCCACCCAAAAAGGCGCCACCAGGTCCCAGCAAGAAGACG
GAGCAGAAAAAGAAGGAGAAAGTCATTGAGGACAAAACCTTCGGGCTGAA
GAACAAGAAGGGCAACAAGCAGCAGAAGTTCATCCAGCAGGTGCAGAAGC
AGGTCCAGTCCGGCGGACAGCATCCTCGCCAGGATGGCGACAAGCGCAAG
GAGGAGAAGGAGAAGAAGCTGGCCGAACAGCGCGAGATGGCGCTGATCTT
CAAGCCGGTACAGACTCAGAAGGTGGAGAAGGGCACCGATCCCAAGTCGG
TGGTCTGCGCCTTCTTCAAACAGGGCACCTGCACCAAGGGCGACAAGTGC
AAGTTCTCCCACGATCTTTCCCAGGAGAACAAGGTCGAAAAGCGGTCCAT
TTATGTGGACATGCGCGACGAGGACGATCCGATGACCAACTGGGACGATG
CCAAGCTGAAGGAGGTGGTCGAGAAGAAGAGCTCCGGCGAAAAGCAACGT
CCCACCACGGATATTATTTGCAAATTCTTCCTGGAAGCTGTGGAAAAATC
AAAGTACGGCTGGTTCTGGGAGTGCCCCAACGGCGGAAAGTGCATCTACC
GTCACGCCTTGCCAGCTGGATATGTGCTGAAGCGCGATAAGAAGAAGGAG
GAAAAGCCCACGGAAATCTCGCTGGTCGATTTAATTGAGAAGGAGCGCGC
TGCCCTCGGTCCCAACCAGACACGCGTCACCCTCGAGTCCTTCCTCGCCT
GAAGAGCGCAAGATTGCCGAGAAGAAGCCAAGCTGGCTGCCGAGGAAGAG
CGCAAGAAGAGTGACTTCAGCAAGGCAACAGTTCGGCATCTCTGGTCGCG
AAATGTTCAGCTTCATCCGGATCTGGTCGACGACGGACCCATGGAGGAGG
GCGACGCTGCTTTCGACGTCTACAACAGGAGGACGACGACGATAATGCCG
TCAGTCAGGAACTGGATCTGGCTGCCCTGTCGCTGCGCCAGGAGGTGGAC
GCTCGGCACATGCCTCCACCATCGACTACTGGACAGCACGAAGCAGCAAC
GGCGCAACCGAGGAACCACCGACCGAAAGATGCATCTCGTCTGACGGCAC
AGTCTGCCATCAAAGGACTTCTGGGACTGACGCGACTGGATAACTATATT
CTGGGGCAT
UFO01715.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8635-RB | 1447 | CG8635-RB | 134..1177 | 9..1034 | 4780 | 98.3 | Plus |
| CG8635-RA | 1572 | CG8635-RA | 259..1302 | 9..1034 | 4780 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8631072..8631508 | 515..79 | 2185 | 100 | Minus |
| 2R | 25286936 | 2R | 8630534..8631013 | 985..516 | 1945 | 97.1 | Minus |
| 2R | 25286936 | 2R | 8631632..8631704 | 81..9 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:36:00 has no hits.
UFO01715.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:49 Download gff for
UFO01715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8635-RA | 259..1319 | 9..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:32 Download gff for
UFO01715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8635-RA | 259..1319 | 9..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:29 Download gff for
UFO01715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8635-RA | 259..1319 | 9..1047 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:29 Download gff for
UFO01715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8630460..8631013 | 516..1047 | 96 | <- | Minus |
| 2R | 8631072..8631506 | 81..515 | 100 | <- | Minus |
| 2R | 8631633..8631704 | 9..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:32 Download gff for
UFO01715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4517965..4518518 | 516..1047 | 96 | <- | Minus |
| arm_2R | 4518577..4519011 | 81..515 | 100 | <- | Minus |
| arm_2R | 4519138..4519209 | 9..80 | 100 | | Minus |
