UFO01716.5prime Sequence
1166 bp (988 high quality bases) assembled on 2008-10-27
> UFO01716.5prime
CAGTCGACATGTCCAGAAAGTACGGCAAGCTGCAGCAGCAGTTCCTCTGT
TGCTATCCGGTGAACAAGATGGCCTGGTCGTCGGTCACGCTGCCCCTCAG
CTGGGAGGATCAGCAGGAGCTGTTAGCGGCCACCTGTGGCCACCCGATGA
ACCAGTGCTATCCTGTGCGTCGCAGCTACCTGGAGGCCTTCCTCAAGCAC
CTGCTACTCCTGCTCGGAGATCAGGAAGATCTGCACGACGATATATACAG
CAGCTTGTGCGGTCCGGTGGCGGAGAACGAAGCGAGCACAGGGTCATCCA
CGTACGCCTACAAACATTATCTCCTCGAACCGGGCGCCCACATCACGCTC
CGTGAGTCCACCAGCTTCGTGGCCGAGGGCACAACGGGATTGTGCACCTG
GGAAGCGGCTCTGGCCCTCGGCGATTACCTCCTGCAGCACCGCGACCTGG
TGCGTGGCAAGAACATAGTGGAGTTGGGAGCCGGTGCCGGGCTGCTGGGA
ATCATGCTGAAACTACCGGCCCTGCAGCTGCAAGTGGGCCAGGTCCTGCT
GACCGATGGCAGTGAACCCTGCGTCCAGCTAATGCGCGAGAATATCAGCC
TGAATTTTCCAGACACGCCCAAGGAGCAGATGCCCCAGGCGGAGCAGCTA
AACTGGGCTGCGGTCAGTGAGTTCTCCTGGGATTCGCATGCTAAAACGGA
TCTTTTGATAGCCGCCGATGTGATCTACGATGATTCCCAGTTCGATGCAC
TGCTGGGTGCCATGGACTATTTGTACTCCCGACGCGGAGGTGGACTGGAA
ACCCTGCTGGCCAGCACGGTGCGGAATGTGGACACGCTGCACAAGTTCAT
GACCCAGCTGGGTGACAGTGGCTACAGTGACTCCATGTGCGAACGTATCG
GCCTGTGCCAGCCACTTTTGTCGCGATCACACCGCCGCCGTCCAGATTAT
CTCCATAGACGCGCAAGCTTTCTAGACCATTCGTTGGCGCCGCGGGCCCA
GGTAGTGGTCTAATCATATCTAATCTATCATATCCCACTAGGCTAAGGTC
TGGTCTGACTATGCTGATTCCCCAATAAACGCCCGCGGGCACGACGTTCT
GACATTCGATGGGAGTTAAGCTATGGATCTCACGGATCAGCGAGCTGATT
CAATATCGCCGGCCTG
UFO01716.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7889-RA | 1468 | CG7889-RA | 110..1066 | 9..962 | 4705 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19243876..19244661 | 80..865 | 3915 | 99.9 | Plus |
| X | 23542271 | X | 19244718..19244816 | 861..957 | 430 | 98 | Plus |
| X | 23542271 | X | 19243740..19243811 | 9..80 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:54:22 has no hits.
UFO01716.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:47 Download gff for
UFO01716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7889-RA | 108..1070 | 9..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:22 Download gff for
UFO01716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7889-RA | 110..1072 | 9..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:46 Download gff for
UFO01716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7889-RA | 110..1072 | 9..971 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:46 Download gff for
UFO01716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19243740..19243811 | 9..80 | 100 | -> | Plus |
| X | 19243877..19244657 | 81..861 | 99 | -> | Plus |
| X | 19244719..19244816 | 862..957 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:22 Download gff for
UFO01716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19137773..19137844 | 9..80 | 100 | -> | Plus |
| arm_X | 19137910..19138690 | 81..861 | 99 | -> | Plus |
| arm_X | 19138752..19138849 | 862..957 | 97 | == | Plus |
