UFO01717.5prime Sequence
1191 bp (1007 high quality bases) assembled on 2008-10-27
> UFO01717.5prime
CAGTCGACATGTCGCCCAAGTACACACATGCGATTGTGGCCAGAATCTCG
GATGCCCTGCTGGAGAACGGAAAGTTCGACGTACAGCTGGCCAAGCAGCA
GCACGAGCAGTACTGCACCCTCCTGAGGACCATTGGTCTCGATGTGATCG
AGCTGCCGCCGGATGACCAGCTGCCCGAGGGCGTATTTGTCGAGAACAGT
GCGGTGATCTGTAACGGAGTGGCCCTGATCGGAAGATCGGAGCATCCCAA
GCGGCAACTCGAGGCCGAGAGCATGGCCATTATTCTCAAAAAGGAGCTGG
ACATTCCGGTCATCGAGATCGAGGATCCGAACGCTCAGCTCGATGGTGGC
GATGTGCTTTTCACGGGTCGCGAATTCTTCGTTGGCATCTCCAGTTTCAC
CAATGAGGAGGGAGCCCGGGCGGTGGCCATGGCCTATCCCGAATATCCAG
TGACGCCGATTCGGGTCAACGGCACCAAGAGGCTGAAGTACTATGTGACC
ATGGCGGGGCCGGAAGTGCTGTGTGTGAGCAGTAGCCCCACCTGCCAGGA
GATCGTCAAGCGGATGGAGCGCGAGGCCATCTGCACCTACCAGAAGTTGA
CTCTGCCCGAGGAGAGTGCGGCCAATATGCTGTACATCAATGGAACGATC
GTGCACAGATCCCCAACGGAAATTCCAGAAGCCTACAAGACTTTAAAAGA
GAAAATCGACATTCCAACACGCAACATAAATATAAGTGAATTTAGCCAAT
ATTCCAGTGGTCTGACCTCGTCGTGTTTGTTGCTGCGACGCTGGAAGTCC
ATACGGAGCTTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATTCAGGATGGGAGTCTGAGGT
CATTACTGATCATCAAAGGAGTCCAGCGAGCTCGATATCAATACGCCCCG
CCTGCCCCTCATTCCGAGTACTGTGTGTATTCATTAAGCATCTGGCGCAC
TGGGAAGCCATCCAACGCATGATGACTGATCGCAGACAGACCTTGCTTGC
TATATTTGCATGTGAACGGGGCGAGAAATGTTCTATTTGAC
UFO01717.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1764-RA | 1395 | CG1764-RA | 104..908 | 8..812 | 4010 | 99.9 | Plus |
| CG1764-RB | 1780 | CG1764-RB | 475..1279 | 8..812 | 4010 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13295687..13296013 | 368..42 | 1635 | 100 | Minus |
| X | 23542271 | X | 13295158..13295383 | 689..464 | 1130 | 100 | Minus |
| X | 23542271 | X | 13294974..13295098 | 812..688 | 610 | 99.2 | Minus |
| X | 23542271 | X | 13295525..13295625 | 466..366 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:11 has no hits.
UFO01717.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:46 Download gff for
UFO01717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1764-RA | 96..919 | 1..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:52 Download gff for
UFO01717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1764-RB | 467..1290 | 1..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:45 Download gff for
UFO01717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1764-RB | 467..1290 | 1..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:45 Download gff for
UFO01717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13295689..13296011 | 44..366 | 100 | <- | Minus |
| X | 13296513..13296555 | 1..43 | 93 | | Minus |
| X | 13294963..13295096 | 690..823 | 96 | <- | Minus |
| X | 13295158..13295382 | 465..689 | 100 | <- | Minus |
| X | 13295527..13295624 | 367..464 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:52 Download gff for
UFO01717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13188996..13189129 | 690..823 | 96 | <- | Minus |
| arm_X | 13189191..13189415 | 465..689 | 100 | <- | Minus |
| arm_X | 13189560..13189657 | 367..464 | 100 | <- | Minus |
| arm_X | 13189722..13190044 | 44..366 | 100 | <- | Minus |
| arm_X | 13190546..13190588 | 1..43 | 93 | | Minus |
