UFO01720.5prime Sequence
1175 bp (1018 high quality bases) assembled on 2008-10-27
> UFO01720.5prime
CAGTCGACATGCCAGAAATGATTTACTCGAGCTCTTTCCTGCTGCTCTGT
TGCACAATCCTGCTGCTGGGAACAGTACAGAATGCCGGTTCCAATAGCAC
CAGCCCTCATCCTCACCAGAATCAAACTCATCGCGGACATGGTCACAGTC
ATCGAACGCGTCATCAGGGCAACTATTTGGCCACCCATCAAAGGCAGCAG
CGCAGACTGCAGTCGCTGAATCAAGCCAAATCGGATGTGGAGCTGCTGCC
CGGGGTCACCATGCACGAGGTCACCAGATTACGACGGGTTCAGCCACATA
ATCCCTACAATAAAGTGCAGACACGACGCCTACACCAATCGCGAAACCCC
ACCGAATGGGATTACAATACTTACAACATCATGACCAACACGTTCGGTCC
ACCGCCACCGCCGATGCCGTTGTCACCGCGATATGGAAAGGGCGAGGATA
ATACCCAGGATGTTGAGTTTATCGGGGTGCGAGAACGTGGAAGGGGTTAC
TCATTCGTGCCATCGGTAACGGTCACCACTGCTCCGCCACCGAATCTGAA
TCGAAGATCCGCGAGTCCTGGTTCTCGCAGTAGCATCGGCACTATTCCAC
CACTGGTTCCGGCCAGAAGGGGCTATAGCTACACCACCACCACAAGTTCT
CCTCCAGTGAACACCATCACCACTGACAATCCCTTCGAGACGAACACCAT
TGGTCGAGGCTATCCCACAGATCCCAAGGAAATGGAAAGGCGGCACATTT
GCATGCAACAGCGAACGGTTACGATGCCCGTGAAGCGAACGGAGGTCTAC
AGTCGTCCCACCTGGAAGCACGTGGCCACGCCCTGCCAGCCGCCCACCTT
TAGTGGCCAGAAGTGCACCAGGTGCAGTGGTCCACGAGCAGGCCTACAGG
GACGTCATCGATCACAGACCGCCCAGCAGATGACCTACGACTGCTGCACG
GGATGGAGCCGGGAAAACCCAAGTCGGATTCGTGCATGAAACCTATTTGC
TCCGCGGCGCTGCCAAACGGTGCATTGTACGCTCCTAGCACCTGCAACTG
TTCAACTGGTTTCAAGAACGTTCTGGCGAACAGAATGTTGACGATGCGAC
GGAAAGCATGGCGATACCAATGCATCAATACCCATGAACTTATTCTGGCC
GGTTGCCGCTCAGGTAATTCGTTTC
UFO01720.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slow-RB | 2104 | CG7447-RB | 228..1368 | 9..1136 | 5120 | 97.6 | Plus |
| slow-RA | 2364 | CG7447-RA | 488..1628 | 9..1136 | 5120 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4390491..4391222 | 9..740 | 3660 | 100 | Plus |
| 3L | 28110227 | 3L | 4401898..4402156 | 738..992 | 1095 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:42:48 has no hits.
UFO01720.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:43 Download gff for
UFO01720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7447-RB | 208..1297 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:50 Download gff for
UFO01720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slow-RA | 481..1570 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:23 Download gff for
UFO01720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slow-RA | 481..1570 | 1..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:23 Download gff for
UFO01720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4390484..4391221 | 1..739 | 99 | -> | Plus |
| 3L | 4401900..4402156 | 740..992 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:50 Download gff for
UFO01720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4390484..4391221 | 1..739 | 99 | -> | Plus |
| arm_3L | 4401900..4402156 | 740..992 | 98 | -> | Plus |
