UFO01723.5prime Sequence
1217 bp (1010 high quality bases) assembled on 2008-10-27
> UFO01723.5prime
CAGTCGACATGTCTACGCCATATGTGATCTTGCTGATCGGTTTACTATAT
CTTTGCGTGGGCCCATTCATAATTGCCCAAGGCTCGGAGTTTGCTGAGCG
CAACCACAAGAAACGCCAAATCTATCGGGAACAAGTATTGCCACATGCGG
GTGGTAAGATACCCGACACCGCCTTTGAGACGGATCGATTGTTTTTGAAT
CGCCTGCAGAAGGAGGGCATCGCAGTGCCAGATGGGATAGTTCCCGAGCA
GCGGAATCCGCAGGTGTATCAGTACTACAGCAAGCCCATGCGCACCGTCT
TCCACATCGCCCTGAGCTCGGATGGGAGGTATACGCCGCGGGAGGGACGA
TACCACTACCGCCAGGTGCCAACGGTGGAGACCACGTACCTGTACCCGCA
GGCGGTGGGCCGCCAGCACGTGGTGGTGCCACCGAAGCACGCCCTGCCCA
TCTACCGGCAGCTTCAGTTGCACAATCCGCTGCTCAACCAGGTCAAGTTG
CAGCCAAAGAAGGCGCCCAATTTTCTGGAACTGGCGCCCACGGTTGGCAA
GAGTCAGTCGCATCCATTGGCCGGTTCGGCCAAGGCGCAGTCTTATCAGA
ATGTGAATCTTCTGCATGGTCACAGTCCGGTGCTGCCCGCTTTCAAGAAA
ACCTCCAGGGGCAGCAAGACCTATGTGGACAGCTATGGCACAACCCATCT
CTTCAGCGAGTTTGACGATCTGCTGAACAAACTGGACCTGCAGCAAACGG
GACGAAAGAATTATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCCCACCAATAAAAA
ACCCCCGGCGGCCACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGGAGCCTCGATATCAAA
TTACCGCCCCCGCCCTGCCACCCCATCGCCAGTACTGTTGTTATTCATTA
GGCATTCTGGCGGACAATGGAAAGCCAATCACAAACCGGCATGTGAGTGA
ACCTGAATCCCCCAGCCGGCATCACGCACCCTGGTCCGCCCTTTGCGCTT
ATATATTTGCCATCGGGTGGAAACCGGGGGGCGCAAGAAGTTGTTCCCAA
TATGTGCCCCAGCGTTA
UFO01723.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32037-RB | 1836 | CG32037-RB | 417..1172 | 9..764 | 3780 | 100 | Plus |
| CG32037-RA | 1540 | CG32037-RA | 417..1172 | 9..764 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9490566..9490818 | 513..261 | 1265 | 100 | Minus |
| 3L | 28110227 | 3L | 9490323..9490508 | 698..513 | 930 | 100 | Minus |
| 3L | 28110227 | 3L | 9491472..9491630 | 265..107 | 795 | 100 | Minus |
| 3L | 28110227 | 3L | 9491698..9491799 | 110..9 | 510 | 100 | Minus |
| 3L | 28110227 | 3L | 9490166..9490231 | 764..699 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:37 has no hits.
UFO01723.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:53 Download gff for
UFO01723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32037-RA | 387..1157 | 1..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:03 Download gff for
UFO01723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32037-RA | 408..1178 | 1..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:38 Download gff for
UFO01723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32037-RA | 408..1178 | 1..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:38 Download gff for
UFO01723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9490159..9490231 | 699..773 | 94 | <- | Minus |
| 3L | 9490323..9490507 | 514..698 | 100 | <- | Minus |
| 3L | 9490566..9490815 | 264..513 | 100 | <- | Minus |
| 3L | 9491474..9491626 | 111..263 | 100 | <- | Minus |
| 3L | 9491698..9491808 | 1..110 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:03 Download gff for
UFO01723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9483259..9483331 | 699..773 | 94 | <- | Minus |
| arm_3L | 9483423..9483607 | 514..698 | 100 | <- | Minus |
| arm_3L | 9483666..9483915 | 264..513 | 100 | <- | Minus |
| arm_3L | 9484574..9484726 | 111..263 | 100 | <- | Minus |
| arm_3L | 9484798..9484908 | 1..110 | 97 | | Minus |
