UFO01725.5prime Sequence
1173 bp (1003 high quality bases) assembled on 2008-10-27
> UFO01725.5prime
CAGTCGACATGCAGCACGACGATGTGGTCTGGAGCATCATCAACAAGTCC
TTCTGTTCGCACAAAGTGAAAACCGACACACGCACCTTCTGCCGCCATGA
GTACAATCTCACGGGTCTGTGCACACGCAGAACGTGTCCGCTGGCCAATT
CACAATATGCCACCGTTCGCGAGGAGAAGGGCATCATCTATTTGTTCATC
AAGACGGCGGAGAGAGCGCATATGCCGAGCAAATTGTGGGAGAGGATCAA
GTTGTCCAGAAACTTCGAGAAGGCCATCGAACAGATCAACGAGAATTTGG
TTTTCTGGCCCAAATACATGATCGCCAAGAATAAGCAGCGTTTCCTCAAG
ATCACCCAATATCTGATACGAATGCGTCGTCTGAAGTTGCGCCGCCAGAA
GCTCATTGTGCCGCTATCGACGAAGATCGAACGGCGGGAGGCGCGGCGCG
AGGAGAAGGCCTTGGTGGCCGCCAAGATCGACAATCACATCGAGAAGGCG
CTGATGGATCGTCTGAAGAATGGCACCTATCGCGACATCTACAACTTTTC
GCAGACCGCTTTCAACAAGGCTCTGGAGGCGGAACGCGTGGACGAGGATG
ATGAGGAGGAGCTAGACGACGAAGACGAGAATGAGGAGCAGCTGGAGCGC
GAAATGGAGGTGGACGGCGACGATTCACGCGAAGCTGAGGAAGTACAGAG
ATCCCTGCTCGACGAGGAGTTCGTCGAGGCAGATACGGACGATGAGGAGG
AGGATGATGATGATGATGATGATGATGACGAGGACGACTACGACAGCGAT
TCCGGCAAGCGGGAAGAGGTCGAGGTGGGCAGCGATTTCGAGGAGTCCGA
CGAGGATGACGATGCGGATGCAGATGATATTGAGGAGACCAAAGTGCCAG
CCAAGAAAACCGCCAGCAAAGCGAGAGACAGAAATCGCCGGCGGGCAACA
GTCGACGCAGCGCTCGAAGCCCAAACTGCAGCTGGAGTACGAGTATGAGG
TGGAGAGAGCACAGCGGCAGATGCGTCATGCAGCCTTCTAGAACATCGTT
GGCGCGCGGGCAGTTAGTGGCTATCTATCTAATCGTAACCTAATCACTAG
CCTAGGAATCTGGCCTGACATGCTGATTCCACAAAAAGCGGGCAACGAAC
TTCTGAACAAATCCCAAGTAGAG
UFO01725.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbm13-RB | 1535 | CG10648-RB | 99..1128 | 8..1029 | 4955 | 99.1 | Plus |
| Rbm13-RA | 1238 | CG10648-RA | 99..1128 | 8..1029 | 4955 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8901998..8902812 | 71..885 | 4075 | 100 | Plus |
| X | 23542271 | X | 8903200..8903354 | 883..1029 | 445 | 90.3 | Plus |
| X | 23542271 | X | 8901880..8901926 | 24..70 | 235 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frogger | 2483 | frogger FROGGER 2483bp | 1932..1971 | 809..770 | 110 | 75 | Minus |
UFO01725.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:40 Download gff for
UFO01725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbm13-RA | 103..1143 | 1..1035 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:58 Download gff for
UFO01725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbm13-RA | 101..1141 | 1..1035 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:35 Download gff for
UFO01725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbm13-RA | 93..1133 | 1..1035 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:35 Download gff for
UFO01725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8901880..8901926 | 24..70 | 100 | -> | Plus |
| X | 8901998..8902811 | 71..884 | 100 | -> | Plus |
| X | 8903202..8903350 | 885..1025 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:58 Download gff for
UFO01725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8795913..8795959 | 24..70 | 100 | -> | Plus |
| arm_X | 8797235..8797383 | 885..1025 | 94 | == | Plus |
| arm_X | 8796031..8796844 | 71..884 | 100 | -> | Plus |
