UFO01728.5prime Sequence
1201 bp (1023 high quality bases) assembled on 2008-10-27
> UFO01728.5prime
CAGTCGACATGGCGAGCAAGCGGCTAATGCTCGATGTGGAGGAAGAAGAT
GATGAAAGTGGAGCGTGTGGTCAGGAGAATTTCGATCCCCATGATGCCGA
TATGGAATACCAGGCCAAAAGGCGAAAATCAGCCGTGCAGGAGACTCCGC
TGCAATGGATGCTGAAGCGGCATATTCCTGCCAGCACCACCGTTCTGTCG
CCCATCACCGAATTGTCGCAGAATATGAATGGAGCCCGCCTGGATGGCAC
TCCCAAGTCCACCCAGAGAATCCCAGCCAACAGGACCCTGAATAACTTTA
ATAGCCTGTCCTCGCGAACACTCGGCAGTTTCAGTAGCTCCTGCTCGAGT
TACGAGTCGGGCAACTCGCTGGATGATGAGTACATGGACATGTTCGAAAT
GGAATCAGCCGAGAATCACAATCTTGAGTTGCCCGATGACTTGGAAGTGC
TCCTCAGCGGACAGCTGAAATCGGAAAGCAATTTAGAGGAGATGTCCAAC
AAAAAAGGCTCCCTGCGTCGCTGCCTTAGCATGTATCCCAGTGAACAGCC
AGAGGAAGCGGTTCAAGAACCAGATCAGGAGACCAACATGCCCATGAAGA
AGATGCAACGGAAAACTCTATCAATGAACGACGCCGAGATCATGAGAGCA
CTGGGAGATGAACCAGAGTTAATCGGAGATCTCAGCAAGCCATGTACCCT
GCCCTGTTTGGCGACAGGCATTAGACATCGTGATCTAAAGACCATCTCCA
GTGACACATTGGCCAGACTGATTCAGGGCGAGTTTGATGAACAATTGGGA
AGCCAGGGCGGATACGAGATCATAGACTGCCGTTACCCATACGAGTTCCT
TGGCGGACACATACGGGGAGCGAAGATTTGTACACACGTGGGCAGATACA
GGAGCGTTTCCCACGCTGACCTCCATCAGAAATCGACGCATCTACGTCTT
CCACTGTGAGTTCTCCCTCGGAACGGGTTCCAAGCTATTGCGCTACCTGC
GGAGCACGACGAGGTCAGCATACCCCCAACTATTCGACTGACTATCCTGA
CTTTATATTCCTGCACAATGGGTACAAGGAGTTCTTCGCTATACTCCGCA
GCTATGGCCAGCCCACCAATATGTAACATGGCGTGGCACGGCCCAGTTAG
ATCCGAATTCGGCAGACAAGTCTGGCATGCCAAGGCGGAAAGTGGTAATC
T
UFO01728.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twe-RD | 1916 | CG4965-RD | 288..1415 | 9..1125 | 5155 | 98 | Plus |
| twe-RC | 2240 | CG4965-RC | 149..1276 | 9..1125 | 5155 | 98 | Plus |
| twe-RB | 1803 | CG4965-RB | 175..1302 | 9..1125 | 5155 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16260416..16261505 | 1088..9 | 4785 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:41 has no hits.
UFO01728.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:39 Download gff for
UFO01728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RA | 282..1426 | 1..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:04 Download gff for
UFO01728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RB | 171..1315 | 1..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:07 Download gff for
UFO01728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RB | 171..1315 | 1..1139 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:07 Download gff for
UFO01728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16260365..16261510 | 1..1139 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:04 Download gff for
UFO01728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16260365..16261510 | 1..1139 | 97 | | Minus |
