UFO01729.5prime Sequence
1190 bp (990 high quality bases) assembled on 2008-10-27
> UFO01729.5prime
CAGTCGACATGGTTCGAAGTTTGGCCCAGTGGACGAAGACGCTGAGCTTC
CCCTCGCGTCTCTCGCCCAATCGCAACTCCAAGGACTGCTCCACTCTGGC
CAGTCCCGTACCGCCACCAACTCCCCCCCGGAACAAGACGACCTCCGGCA
GTGGAAACTGCGCCACATCGCGCTCCTCCTCGTCGACGGTGTCCTCATCG
CACTCGTCCTCACACAGTTCACCCACTCCTGGGAACAACAACAACAACAT
GCCCATCACGGAACTGGAACAGATTATCTATCCCGGTCCCGATCCAAAAC
ACATTATGGGCTCCTTGGTCTTTTGCATTCATCACAAACAGGGCTGCAAG
TGGTCCGATGAGCTGCGAAAGCTGAAGGGACATCTCAACGCCTGTAAGCA
CGATGCCACCCAGTGCCCCAACAAGTGCGGAGCCCAGATTCCCCGCATCA
TGATGACCGATCATCTCCAGTACACCTGCACGATGAGGCGTACCCGCTGC
GAGTTCTGCCAGAGCGAATTCTCCGGTGCTGGCCTAGAGGAGCACAACGG
AAGCTGCGGCCAGGAGCCGGTTTACTGCGAGGCCAAGTGCGGCCAGCGGA
TACTGCGCGGCAGGATGACCCTTCACAAGTCGAAGGACTGTGCCAAGCGA
CTCCGTCGTTGTGCCCACTGCCAGCGGGAATTCTCGGCTGACACACTGCC
CTTGCATGCCGCCCAGTGCCCAAGAGCCCCGTTGGCCTGCCCGCAGAGAT
GCGATGCTGGTCCGATTCCCCGGGGTGAGCTAGAGGCGCATTTGCGTGAT
GAATGCCAGTCGCTAGCCGTGTCCTGCAGCTTCAAGGAGGCGGGATGCCG
CTTCAAGGGTCCACGCCAGATGCTGGAGGCCCATCTGGAGAGCAACGCCG
CCGCTCATCTCTCGCTGATGGTGGCCTCAGCTCGCGCCAGGGTCAGCAGA
TCAGATGCTCAAGTCGGCGGTGTCCAAGCTGTCCATCAACTAACAGGCCC
TTTTGGTTGGGGAGATCACCGACTGGTCGGCTAGAATGTGAGCGAGGGCA
AGATGCTGAACTAGTCCACCCCGTTCTAACCTCCAGATTGGTTCAGCTGC
AAGCCTCTGTTCTCTAATGGCAATGACTGAACGCAGTTCGCTCATAAGGT
CTGCGGGAAATACCAAGTCTCTGCTGTCTTCAAGTGGAAC
UFO01729.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf4-RA | 2361 | CG3048-RA | 284..1310 | 9..1033 | 4960 | 99.1 | Plus |
| Traf4-RE | 2675 | CG3048-RE | 865..1624 | 276..1033 | 3625 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4378906..4379665 | 276..1033 | 3520 | 98.2 | Plus |
| 2L | 23513712 | 2L | 4372273..4372539 | 9..275 | 1335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:54:11 has no hits.
UFO01729.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:38 Download gff for
UFO01729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf4-RA | 284..1320 | 9..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:13 Download gff for
UFO01729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf4-RA | 284..1320 | 9..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:38 Download gff for
UFO01729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf4-RA | 284..1320 | 9..1045 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:38 Download gff for
UFO01729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4372273..4372539 | 9..275 | 100 | -> | Plus |
| 2L | 4378906..4379683 | 276..1048 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:13 Download gff for
UFO01729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4372273..4372539 | 9..275 | 100 | -> | Plus |
| arm_2L | 4378906..4379683 | 276..1048 | 98 | -> | Plus |
