UFO01731.5prime Sequence
1174 bp (999 high quality bases) assembled on 2008-10-27
> UFO01731.5prime
CAGTCGACATGCCCATTCACGCCGTGATGGCCAAGCGCCTGCACCACCAG
CCTACCTTCGATGGGGATCCACCCGGTCCGGATGAGCTGGACAGTCCAGC
CATCGAGGCGGCGGCCCTCGACATTCCCCCTCCCGAATCCGATAAGGCGC
TCCAAAAAGGTGTCTGGGAGCGAGCCACAAGTGCTGAGTATAAGCCGACC
ACGGATGGGAGCACCGTGCTCCGCTTTGACATCTTGCTGGCCCACATAAT
GCCGCCCGATGGCGAGGATGTGAAGATCAAGCGGTTCGTGGTCTATGAGC
TCACTGTTAAGCAGGATGGAGCCACGGAGGACACTCAGCCGGCAAAGATT
GAGCGCCGATACACCGACTTTCGGGAGCTTTATCTGGGCCTTAAGCGGCA
GCATCCGGCGGAGATGGCCAACAAGTACTTCCCAGCCAAGGTCCTGATGG
GTAACTTCAAGTCCGAGCTGATCGGCGAACGGAGTGCAGCCTTCGAGGCA
TTCCTCACGTATGTGGCAAGCCAGGCGATGCTCCGGGACTCGGAGTACTT
CCTGCGCTTCCTGCAGCACGACGAACTGACCAGGGCGTGCCAGTTTCTGG
ATGAGCGGCGTAACGAAATGGCCATACCTATTCTGGAGAACTGTTTCCGC
TTGCTGAACAAGATATACATGAATCGATCGAGGCCGGTGCTTTTGATACT
CTGCCGTCTAGTGGCTGCCTGCACCTCATCCCCAGTGCCTCATCACGCGG
CCGAGAGGTGGGCCCTGCTGGCACTGAGTCGCTTCGAGACGTTGTGCGAT
ATTGATCTGCTGCCGCTCTACATTCCCCTGCTTCACACCTGCGCCCATCT
GTGGTGGCAGCGCGGCCAGGACCAAAAGCCAATCACCGACCGACTGACTG
ACATGTCCAAGCAGGCATCAACACGGCGAACACCGAAGAGCCTCATGCAA
GCTATTACACAAGATCGATCCTCCGCACTGAAACAATTGCAGCTTTCTAA
AACATCGTTTGGCGCGCCGGCCCAGGTAGTTGTCAAATCTTATCATAATC
TAATCATAATCCCACTAGCTAGGAGATCTGGTCATGAATATGCTTGATTC
CCACAATTAAAGCCGGGCACAGCTCGACATCAGTGATCTAGGCTACTGGG
ATCTACAACGGAGGTCACCGGAGC
UFO01731.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3077-RA | 1372 | CG3077-RA | 164..1141 | 9..988 | 4790 | 99.5 | Plus |
| CG3077-RB | 2025 | CG3077-RB | 162..1132 | 16..988 | 4755 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2764502..2765200 | 856..158 | 3495 | 100 | Minus |
| 2L | 23513712 | 2L | 2765282..2765427 | 161..16 | 730 | 100 | Minus |
| 2L | 23513712 | 2L | 2764309..2764442 | 988..853 | 470 | 96.4 | Minus |
Blast to na_te.dros performed 2014-11-28 20:34:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 1158..1239 | 245..327 | 115 | 63.1 | Plus |
UFO01731.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:01 Download gff for
UFO01731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3077-RA | 182..1162 | 5..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:50 Download gff for
UFO01731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3077-RA | 161..1141 | 5..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:42 Download gff for
UFO01731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3077-RA | 161..1141 | 5..988 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:42 Download gff for
UFO01731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2764309..2764441 | 854..988 | 96 | <- | Minus |
| 2L | 2764505..2765198 | 160..853 | 100 | <- | Minus |
| 2L | 2765284..2765432 | 12..159 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:50 Download gff for
UFO01731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2764309..2764441 | 854..988 | 96 | <- | Minus |
| arm_2L | 2764505..2765198 | 160..853 | 100 | <- | Minus |
| arm_2L | 2765284..2765432 | 12..159 | 99 | | Minus |
