UFO01733.5prime Sequence
1135 bp (972 high quality bases) assembled on 2008-10-27
> UFO01733.5prime
CAGTCGACATGTCCGGCATTGCTATTACACGATTGGGGGAGGAGCGCAAG
GCCTGGCGCAAGGATCACCCATTCGGGTTCGTCGCACGACCCGCCAAGAA
CCCTGACGGCACCCTCAACCTGATGATCTGGGAGTGCGCCATTCCCGGCA
AGAAGTCCACCCCCTGGGAGGGCGGGCTCTACAAGCTGCGCATGATCTTC
AAGGACGACTACCCCACCTCGCCGCCCAAGTGCAAGTTCGAACCGCCGCT
GTTCCACCCGAACGTCTATCCCTCGGGCACCGTTTGCCTGTCGCTGCTGG
ACGAGGAGAAGGACTGGCGCCCCGCCATCACCATCAAGCAAATCCTGCTG
GGCATCCAGGACCTGCTCAACGAGCCGAACATCAAGGACCCGGCCCAGGC
GGAGGCCTACACCATCTACTGCCAGAACCGACTGGAGTACGAGAAGCGCG
TGCGTGCCCAGGCCCGCGCCATGGCGGCCACCGAGGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGC
ATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTAT
ATATTTGCCCATGGTGAAACGGGGGCGAAGAGTTGTCCATATTGCCACGT
TTAAATCAAACTGGTGAAACTCACCAGGGATTGCTGAGACGAAAACATAT
CTCATAAACCCTTTAGGAAATAGCAGTTTCACGTACACGCACATCTGCAA
TATATTGTGTAGAACTGCGAATCGTCTGCATTCACTCGAAGATGAAACGT
TCAGTGGCTCATGAACGGTACAGTGTAACATATCCCATACAGTACGTCAT
GCATCGACTCGATGAACTTCCTAAGCGCCAAAAGT
UFO01733.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lwr-RD | 1105 | CG3018-RD | 250..727 | 8..485 | 2345 | 99.4 | Plus |
| lwr-RC | 1363 | CG3018-RC | 254..731 | 8..485 | 2345 | 99.4 | Plus |
| lwr-RB | 1294 | CG3018-RB | 283..760 | 8..485 | 2345 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 541771..542248 | 485..8 | 2345 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:42:18 has no hits.
UFO01733.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:58 Download gff for
UFO01733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lwr-RB | 268..752 | 1..485 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:12 Download gff for
UFO01733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lwr-RB | 276..760 | 1..485 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:19 Download gff for
UFO01733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lwr-RB | 276..760 | 1..485 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:19 Download gff for
UFO01733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 541775..542255 | 1..481 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:12 Download gff for
UFO01733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 541775..542255 | 1..481 | 98 | | Minus |
