UFO01736.5prime Sequence
1088 bp (914 high quality bases) assembled on 2008-10-27
> UFO01736.5prime
CAGTCGACATGTTTCTGTTTCTGTTTCTTCTCTGGTTGTTGTTATCGCTT
GTGTTGGTGGCAGTACTCTCTTTCCTTTTCCTGAGGCAATGGTTGCTTGG
CCGGAAGAATAAGTTGCACACATCGTCGGAAAATGGCATCAACGTGGGCA
TTTTTCACCCGTATTGCAACGCGGGTGGCGGCGGAGAACGCGTCTTGTGG
TGCGCCGTGAGAGCACTACAGGAAAAGTACCAGAACGCCAGGATGGTAAT
CTACACAGGCGACATAGACGCTTCTCCCAATTCCATACTGCAAAAGGCCA
AGAATGTCTTCAACATTGCCGTCGATAGTGACAATGTGAAGTTCGTCTTC
CTGAAGCAACGCCACTGGATCGAGGCCAAGAACTATCCTCATTTCACTCT
GCTGGGCCAGAGCATTGGATCGATGGTCGTGGGTCTGGAGGCACTCTGCA
GGTTTCCGCCCGACATCTACATCGACACCATGGGATACGCCTTTACGTAT
CCTCTGTTCCGCTACTTGGCCCAGTCCAAGGTGGGCTGCTATGTTCACTA
TCCGGTTATTAGCACCGATATGCTGAAGAGGGTTCAGCAGCGACAGATGT
CGCACAACAACAAGAAGTACGTGGCGAGGAACCCCTTTCTCACCTGGACT
AAGCTTGCCTACTACCGCCTCTTCTCAAGAATGTACAAGTGGGTTGGCTG
TTGTGCTGAGACTATCATGGTGAACTCCTCGTGGACCGAGAATCATATTC
TGCAACTGTGGGATGTGCCCTTCAAACACACCGGGTTTACTCCTCCGTGC
GAGGTTAGTCACCTAAAGAGTCTTCAGCACACGGAAAAGCGACGATTCAT
CATACTGTCTGTCGGACAGTTCCGCCCGGAGAAGACCATCCCCTCAGCTG
CAGGCATATACGAGCTCGACTCTCTGACCCAGACGAGCCCTTGGACAAGT
AGTGTATGGTGGCTCCTGCGAAATGAGATGACTACGAGCATGAAAACATG
CAGACTGACAAGCATCTGTCCTAGAAACATGGCATAGTGAGTCATACGAG
ACCTTCTTAGGTGTGGTATCTATCAGAACTGGTGGCCA
UFO01736.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11306-RB | 1994 | CG11306-RB | 270..1317 | 9..1027 | 4430 | 96.5 | Plus |
| CG11306-RA | 1563 | CG11306-RA | 94..1141 | 9..1027 | 4430 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21626940..21627400 | 220..680 | 2305 | 100 | Plus |
| 3L | 28110227 | 3L | 21626432..21626625 | 29..222 | 970 | 100 | Plus |
| 3L | 28110227 | 3L | 21627462..21627704 | 681..917 | 825 | 95.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:35:34 has no hits.
UFO01736.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:42 Download gff for
UFO01736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11306-RA | 72..1019 | 1..937 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:01 Download gff for
UFO01736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11306-RA | 85..1032 | 1..937 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:36 Download gff for
UFO01736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11306-RA | 85..1032 | 1..937 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:36 Download gff for
UFO01736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21626432..21626624 | 29..221 | 100 | -> | Plus |
| 3L | 21626942..21627400 | 222..680 | 100 | -> | Plus |
| 3L | 21627462..21627728 | 681..937 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:01 Download gff for
UFO01736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21619532..21619724 | 29..221 | 100 | -> | Plus |
| arm_3L | 21620042..21620500 | 222..680 | 100 | -> | Plus |
| arm_3L | 21620562..21620828 | 681..937 | 94 | | Plus |
