UFO01737.5prime Sequence
1160 bp (997 high quality bases) assembled on 2008-10-27
> UFO01737.5prime
CAGTCGACATGTGTGGAAATCCAGCTGTGGGAAACGGGACGAGGGCGTTG
ATTCTGGTCGGTGGTTATGGGACCCGGCTGCGACCCCTGACCCTCAGCAC
GCCCAAGCCACTGGTGGAGTTTGCCAATAAGCCGATTCTTCTCCACCAAC
TGGAGGCACTCGTCGATGCGGGATGTCGTCAGGTTATTTTAGCCGTCAGC
TATCGAGCCGAGCAAATGGAAAAGGAGCTTAAAGTCGAAGCCAAGAAACT
GGGCGTGGAATTGATCTTCTCACACGAGACGGAACCCCTGGGAACAGCTG
GACCTCTGGCCCTAGCAAAAACGATTTTAGCAGCCAGCTCAGAGCCATTT
TTCGTGCTCAATTCGGACGTTATATGCGATTTTCCATTTAAACAACTAGT
GCAATTCCATTGTAATCACGGAAAAGAAGGCACAATTGTTGTCACAAAGG
TCGAAGAACCATCCAAATACGGAGTTGTGCTGTACGATGAGAACGGCTGT
ATAAAAAACTTTATTGAAAAGCCACAAGAGTTCGTTAGCAATAAGATCAA
TGCCGGCATTTACATCTTTAATCCCTCCGTGCTTGACCGGATCGAAGTTA
AGCCCACATCAATAGAGAAGGAGGTGTTCCCTGAAATGACGCAGCAACAG
GAGTTGTATGCAATGGATTTAACTGGATTCTGGATGGACATCGGACAGCC
AAAAGACTTCCTAACCGGCATGTGTCTGTATCTAAGCTCGCTGCGCCAGA
AGCAATCCCCCAAGCTGTACACAGGCCCTGGAGTGGTGGGCAACGTGTTG
GTGGATCCCACGGCCAAAATCGGCGAGGGTTGTCGCATAGGGCCTATGTA
ACCATTGGACCGGACGTGGTCATCGAGGATGGCGTGTGCATTAAGCGCTC
GACCATCCTCAAAGGCGCCATCGTTCGCTCACACTCATGGCTGGACTCCT
GCATTGTCGGTGACGTTCTACAGTTGGCGTTGGGTCGCATCGAGCATCAC
GTGCTAGCGAGATGTATCGTGAAGATGACCTCTACTTTAATGGAGCAGTC
TGCCATAAGCATGCGCCAGTTCCCAGACCGAGATCATATGCAGCTTTCTA
ACCATTGTGGGCCCGGCCAGAAGTGCTAACATCATATCTATTCTATCACA
CATACCTCTG
UFO01737.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1129-RE | 2499 | CG1129-RE | 1265..2312 | 9..1045 | 4930 | 98.7 | Plus |
| CG1129-RD | 1612 | CG1129-RD | 165..1212 | 9..1045 | 4930 | 98.7 | Plus |
| CG1129-RA | 1715 | CG1129-RA | 268..1315 | 9..1045 | 4930 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4814236..4814774 | 180..718 | 2695 | 100 | Plus |
| 3R | 32079331 | 3R | 4815286..4815549 | 717..978 | 1205 | 98.9 | Plus |
| 3R | 32079331 | 3R | 4813803..4813978 | 9..184 | 880 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G2 | 3102 | G2 G2 3102bp | 170..235 | 580..645 | 114 | 63.6 | Plus |
UFO01737.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:53 Download gff for
UFO01737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1129-RA | 244..1265 | 1..1016 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:48 Download gff for
UFO01737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1129-RB | 402..1423 | 1..1016 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:40 Download gff for
UFO01737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1129-RA | 263..1284 | 1..1016 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:40 Download gff for
UFO01737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4813798..4813976 | 1..182 | 97 | -> | Plus |
| 3R | 4814239..4814773 | 183..717 | 100 | -> | Plus |
| 3R | 4815287..4815594 | 718..1016 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:48 Download gff for
UFO01737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 639520..639698 | 1..182 | 97 | -> | Plus |
| arm_3R | 639961..640495 | 183..717 | 100 | -> | Plus |
| arm_3R | 641009..641316 | 718..1016 | 96 | | Plus |
