UFO01738.5prime Sequence
1179 bp (1004 high quality bases) assembled on 2008-10-27
> UFO01738.5prime
CAGTCGACATGCAGTCGCGCAGCAAGTCCGATATGAAGCCCATACGAAAG
GAGATCCTCAATCCGGGAAACGCCTACATCGAGCTAACCCCGGGCACCAG
GGTGAAGTTCCACTTTCAAACGCGGAGGGCCGGCGACAGTCGCATCATCG
ATGATAGCCGCAAGATGGAGAAGCCCATGGAGCTGGTCCTGGGGAAGAAG
TTTAAGCTAGAGGTCTGGGAGCTGATTGTGCAGCAGATGTCCCTTAACGA
AGTGGCCAAGTTCACGGTACATAAGTCGCTCTGCGCTCAATATCCTTTTA
TATCCAAGACCCTGCGGGACATTGGCAAGAAACCGGAGGAGCGACGTCAC
TGCTGCGGAATGACATTGCAGAACGAGGGCATTGGGTACACCGACCTGGA
TGAGCTGCTGCAAAATCCTTCCGATCTGGAGTTCATCATTGAACTGTTCT
CCATTGAGCTGCCCGAGCAGTACGAAAAAGAGCGCTGGCAGATGTCCGAC
GACGAAAAGATGCTGGCCACCAGTACGCTGCGCGAACGGGGCAACAACTT
CTATAAGGCCAGTCGGTTCACAGAGGCGGAGACCTGCTACCGCGAGGCTG
TCGGAATTGTGGAGCAGCTGATGCTAAAGGAGAAGCCGCACGACGAGGAG
TGGCAGGAGCTGGCGGCCATCAAGACACCGCTGTTGTTGAACTACGCGCA
ATGTCGGTTGATCGCCGGCGACTTCTACGCTGTGATCGAGCACTGCAACG
AGGTGCTCACCCTGTATCCGCGCAATGTCAAGGCACTTTTTCGTCGGGCC
AAGGCCCATGCGGGTGCCTGGAATCCAGCACAGGCACGTCGCGACTTCCT
CGACGCCTTGGCCTTGGACGCCAGCCTCAGTCGACGTGTCTAAGAGCTCA
GTCCATCGAGGATCAGCAGCAGCACGTACGTCCAGGATCGCATTCACATG
CAGAGCTCTTCGCAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCAAGT
TAGTGTCATAATCATATCATATCATATCATATTCCACTAGCTAGGAATTC
TTGTTCATTGACTATGCTTGATTCTCTACATTAAACGCCCGGCACGACGT
CTGACCATTCCGATGTGATTCGAGTCTTTATCTGGTATCTCTACTCACGA
GAGTTCCAGCGAGCTGAGATACCTAAAAG
UFO01738.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1847-RC | 1776 | CG1847-RC | 78..1037 | 9..961 | 4610 | 99.2 | Plus |
| CG1847-RA | 1776 | CG1847-RA | 78..1037 | 9..961 | 4610 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11869739..11870421 | 278..954 | 3100 | 99 | Plus |
| X | 23542271 | X | 11869481..11869658 | 101..278 | 890 | 100 | Plus |
| X | 23542271 | X | 11869247..11869343 | 9..105 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:20:18 has no hits.
UFO01738.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:51 Download gff for
UFO01738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1847-RA | 52..1022 | 1..965 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:01 Download gff for
UFO01738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1847-RA | 70..1040 | 1..965 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:58 Download gff for
UFO01738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1847-RA | 70..1040 | 1..965 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:58 Download gff for
UFO01738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11869239..11869339 | 1..101 | 97 | -> | Plus |
| X | 11869482..11869658 | 102..278 | 100 | -> | Plus |
| X | 11869740..11870421 | 279..954 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:01 Download gff for
UFO01738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11763515..11763691 | 102..278 | 100 | -> | Plus |
| arm_X | 11763272..11763372 | 1..101 | 97 | -> | Plus |
| arm_X | 11763773..11764454 | 279..954 | 98 | == | Plus |
