UFO01739.5prime Sequence
1165 bp (1007 high quality bases) assembled on 2008-10-27
> UFO01739.5prime
CAGTCGACATGCCAGATTTGCGGATCCCGAGCCAGCGTCTCCGGACAGCG
TTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATTGAGGCCTTCAAG
CAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCTCGACGATGTGCT
CCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTGAGAGCCAGAAAT
CGCAACAGGGCAAGGAAAAACGACCGAGTAAGTATACGCAGTGTGGTTCA
GTACATTTCACTTCTTAGCTATTTGGATAGTGTATTGCTTTTCCCTTTCG
AGCACTTCAGCGCAAACCCTTGCCAAGTGCTGGCCGCTGAAGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTT
GCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATA
TTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGA
GACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTT
CACCGTAACACGCCACATCTTGCGATATATGTGTAGAAACTGCCGGAAAT
CGTCGTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGA
AACGGTGTACAGGTGACACTATCCATTATCACCAGCTCACGTCTTTCATG
CATACGAATTCGGATGAGCATCATCAGCGGCAGATGTGATAGGCCGGATA
AACTGTGCTTATTTTTCTTTACGTCTTAAGCGTAATAACACTTGACGTTT
GTTACGTACTTGACACTGACTGATGCTAAGTTCTTTCGAGTCATTGGGCA
TATATACCACGGGGG
UFO01739.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9368-RD | 2423 | CG9368-RD | 144..477 | 8..341 | 1670 | 100 | Plus |
| CG9368-RA | 1828 | CG9368-RA | 144..365 | 8..229 | 1110 | 100 | Plus |
| CG9368-RB | 1813 | CG9368-RB | 144..363 | 8..227 | 1100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19601776..19601977 | 8..209 | 1010 | 100 | Plus |
| 3L | 28110227 | 3L | 19602039..19602174 | 206..341 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:00:10 has no hits.
UFO01739.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:50 Download gff for
UFO01739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RC | 117..456 | 1..341 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:41 Download gff for
UFO01739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RD | 138..477 | 1..341 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:31 Download gff for
UFO01739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RD | 138..477 | 1..341 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:31 Download gff for
UFO01739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19601770..19601976 | 1..208 | 98 | -> | Plus |
| 3L | 19602042..19602174 | 209..341 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:41 Download gff for
UFO01739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19595142..19595274 | 209..341 | 100 | == | Plus |
| arm_3L | 19594870..19595076 | 1..208 | 98 | -> | Plus |
