UFO01742.5prime Sequence
1166 bp (996 high quality bases) assembled on 2008-10-27
> UFO01742.5prime
CAGTCGACATGTTTGGAAGACAAAGTGGACTGGGTAGTTCCAGCAACAGC
AGCAACCTGGTGGAGTTCCGCGCAGGTCGCATGAACATGGTGGGCAAGAT
GGTGCATCCGGATCCGCGCAAGGGCCTGGTCTACATGACCCAGAGTGACG
ATGGCCTGATGCACTTCTGCTGGAAGGATCGCACCTCCGGCAAGGTGGAG
GACGATCTCATCGTCTTCCCCGATGACTTCGAGTACAAGCGCGTCGATCA
GTGCAAGACGGGCCGTGTCTATGTGCTTAAGTTCAAGTCATCGACACGCC
GCATGTTCTTCTGGATGCAGGAGCCCAAGACGGACAAGGACGACGAGCAG
TGCCGCCGCATCAACGAGCTGCTGAACAACCCTCCATCCGCCCACCAGCG
CGGCGGCGGCGGCAGCAACGACGGCGACCTCCAGTACATGCTCAACAACA
TGTCGCAGCAGCAGCTGATGCAGCTCTTCGGCGGCGTTGGCCAGATGGGT
GGTCTCAGCTCGCTGCTGGGCCAAATGAACTCCCGGACGCCCTCGTCGCG
CAACACCTCCTCATCGGGTGGCGGTGGGGCATCGGCCTTGCAGACGCCCG
AAAACGTCAGTGTGCCGCGCACTCCGAGCGCTCCATCGAAATCGGGCAGC
AGCCGCAGCAGCAGCAATGTGAACTCGCAGGTCGGCGAAGGTGCCGGCTC
CTCCGTTGATGCGGATGCCCCCGGACGATCCCTGAATATTGACCTATCGA
CGGCCCTACCCGGCGCCGATGCCATCAATCAGATAATTGCCGATCCGGAG
CATGTCAAGACGCTGATCGTGCACCTGCCCGAGTCGGAGGATGTGGACGA
TGATCGCAAGCAGCAGATCAAGGACAATATCACCTCCCGCAGTTCCAGCA
GCTCTGGCCCAGTTCTCCAGTGCCCTGCATCGGCCCAGCTGGACCTGTGA
TCAGCATTCGAGTTGTCACGAGCATGGCCGCGCCTTCTCTGCATCTAGAA
GATTTGTGCGTGCTCTGGAGAAAAGTCTGCCCCCGTGCACATGGTGGCAA
CCCTCCGCCAGCGAGAGAAGCAGCGATCGATCCCACTCATGCCGGATGAA
ACAGAATTCCGCTCGAAACGAGGAGCCAAGCAACTTCGAACTCGTTGGGC
GCGTGCGGGCCAGATT
UFO01742.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13-RF | 1390 | CG13349-RF | 120..1213 | 8..1078 | 4895 | 97.7 | Plus |
| Rpn13-RB | 1390 | CG13349-RB | 120..1213 | 8..1078 | 4895 | 97.7 | Plus |
| Rpn13-RA | 1377 | CG13349-RA | 107..1200 | 8..1078 | 4895 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13959568..13960089 | 529..8 | 2610 | 100 | Minus |
| 2R | 25286936 | 2R | 13958866..13959100 | 953..723 | 975 | 98.3 | Minus |
| 2R | 25286936 | 2R | 13959204..13959398 | 724..530 | 975 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:35:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 1692..1795 | 1021..917 | 135 | 62.6 | Minus |
UFO01742.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:44 Download gff for
UFO01742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13349-RA | 98..1202 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:00 Download gff for
UFO01742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13-RA | 98..1202 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:35 Download gff for
UFO01742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13-RA | 98..1202 | 1..1084 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:35 Download gff for
UFO01742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13958720..13959099 | 724..1084 | 92 | <- | Minus |
| 2R | 13959205..13959398 | 530..723 | 100 | <- | Minus |
| 2R | 13959568..13960092 | 1..529 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:00 Download gff for
UFO01742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9846225..9846604 | 724..1084 | 92 | <- | Minus |
| arm_2R | 9846710..9846903 | 530..723 | 100 | <- | Minus |
| arm_2R | 9847073..9847597 | 1..529 | 99 | | Minus |
