UFO01743.5prime Sequence
1178 bp (32 high quality bases) assembled on 2008-10-27
> UFO01743.5prime
CAATCCACATGTCCTCGTCGTCGACGTCCGGCGGCCGGAAGCAACCCACT
GCTGTGTCGCGCATGAAGCAGGACTATATGCGCCTCAAGCGGGATCCCCT
GCCGTACATAACCGCCGAGCCGCTGCCCAACAACATCCTCGAGTGGCACT
ACTGCGTCTAGGGGGCGGAGGACTCGCCCTACTAGGGCGGCTACTACCAC
GGCACCCTGCTCTTTCCGCGCGAGTTCCCATTCAAGCCGCCATCCATCTA
CATGCTGACGCCGAACGGTCGCTTCTAGACCAACACCAGACTGTGTTTGA
GTATATCAAATTTTCATCCGGACACTTGGAACCCGACTTGGTGCGTAGGC
ACCATTCTCACTGGACTGCTGAGCTTCATGCTGGATAGCACACCCACACT
CGGATCCATCGAATCATCGAACTATGACAAGCAAATGTTTGCTCAAAAAT
CACTAACATTTAACCTGCACAACACCAACTTCTGTGATCTGTTTCCGGAG
ATAGTCTAATAGATCAAGCAGCGGCTGCGAGGAACACAGGCGGCAGCTGC
TGTGGACGGACCCGCTGCCAATGGAGTAAAGAGTTCCAACGGACAGGCCA
ACGGATCGAGCCTGGAATCTGCGGATGGCAATCTGGCGGTGGGCGGCTTG
ATAATCCACTGAATGCATCTGACACAATCGATGGCGGGGCGGCGGGTCAG
GCGGATTTGACCAGCGGCGGAAGAGCGGTGGTCCATATAGTGCACGGAAC
TCCTATCTAAACTGGCAGTCCGTCTATTCAAACTGGTGATCATTATCTGC
TTTGCATTTTGCCTCCTTGATATTACGTGATCATGACCTGATCGTGATCA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCAGTAGTGGTCATATCATA
TCATATCATATCTTATTCCCACTATCTAGGAGATGCTGGTCATGACTATG
CTGGATCTACCAGTAGAATCCCCCGCGGCACTGACGTCTGACAATTCAGA
TGGAGCTGCGGAGGCGTACTGATCATTAGAGGGAGTCAATCAGGCCGAAA
CAAGTAGCCGACTGCACTACTGGAGACTGTGGAGTCCTAGCCTCGGCCGA
CTGGAGCTTAGACGGTGTACGGTTACCCCTGATCGCAATGGCCTCGGCCA
ATATTGGCGATGGGCACACGAGAGGCTA
UFO01743.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-RB | 1789 | CG5823-RB | 542..1383 | 8..841 | 3615 | 95.8 | Plus |
| CG5823-RA | 1850 | CG5823-RA | 603..1444 | 8..841 | 3615 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17532767..17533200 | 810..380 | 1720 | 94.7 | Minus |
| 3R | 32079331 | 3R | 17533624..17533924 | 308..8 | 1445 | 98.7 | Minus |
| 3R | 32079331 | 3R | 17533260..17533334 | 380..306 | 360 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:15 has no hits.
UFO01743.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:43 Download gff for
UFO01743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 585..1411 | 1..822 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:57 Download gff for
UFO01743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 597..1423 | 1..822 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:55 Download gff for
UFO01743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 597..1423 | 1..822 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:55 Download gff for
UFO01743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17532724..17533199 | 381..848 | 92 | <- | Minus |
| 3R | 17533260..17533330 | 310..380 | 100 | <- | Minus |
| 3R | 17533623..17533930 | 1..309 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:57 Download gff for
UFO01743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13358982..13359052 | 310..380 | 100 | <- | Minus |
| arm_3R | 13358446..13358921 | 381..848 | 92 | <- | Minus |
| arm_3R | 13359345..13359652 | 1..309 | 97 | | Minus |
