UFO01745.5prime Sequence
1171 bp (978 high quality bases) assembled on 2008-10-27
> UFO01745.5prime
CAGTCGACATGATGTCGGAATACTGGATTATCTCGGCCCCTGGCGACAAG
ACCTGCCAGCAGACGTACGACACGATGAACAATCTGACCAGCAAGCAACA
CAACCTGTGCAATAACTACAAGTTCCATATTCCAGATCTTAAGGTGGGCA
CCCTCGACCAACTGGTGGGCCTCTCCGACGATCTGGGCAAACTGGACACC
TATGTGGAGCAGATCACCCGCAAGGTGGCCAACTATCTGGGCGAGGTGCT
CGAGGATCAGCGGGACAAGCTGCACGAGAACCTGATGGCCAACAACACCG
AACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCAAGTATCCG
ATCAAGCAGTCGCTGCGCAACATCGCCGACATTATCTCCAAGCAGATCGG
TCAGATCGATGGCGATTTGAAGACCAAGTCGCAGGCCTATAACAACCTCA
AGGGAAATCTGCAGAATCTGGAAAAGAAGAAGACTGGCAGTCTGCTGACC
AGGAATCTGGCTGATTTGGTCAAGAAGGAGCACTTCATCCTGGACTCGGA
GTACCTGACCACCCTGCTGGTCATTGTACCCAAGGTCATGGCTAATGACT
GGCTGACCAACTACGAGAAGATCACCGACATGATCGTGCCCCGCTCGTCG
CAGCTCATCCAGGAGGACGCCGACTACTGCCTGTTCAACGTGACGCTCTT
CAAGAAGGTTGCCGAGGAGTTTAAGCTGCATGCCCGCGAGCGCAAGTTCA
TTGTGCGCGACTTTGTGTACAACGAGGAGGAGCTGGCTGCCGGCAAGAAC
GAGATGACCAAGCTGATGACGGACAGAAGAGCAGTTTGGTCCTTTGGTTC
GTTGGCTGAGTGAACTTCAGCGAGGCCTTCTGCGCCCTCATCACGTCAAG
GCGCTGCGCGTGTTGTGGAATCCGTGCTGAGATACGGACTGCCTGTACTT
CAGGCCATCTTGATCGAGCCCAACAAGAAGAGCGTGAAGGGTCTGCCCGA
TGTGCTCCACCAGCTGTATGTCACTGATGGCCCTCCCGCCCGGCGGTGCC
TGTCAGCATGCTGATACGATAACCTCCCCCGCCTGACTGGCCAGTCCGAT
CTTTCCAATGTCCAGGTCACTCGTAATGTGACAGGCAAGGTGTCCAAGCC
TTCTCTTAGAACACATTCGTC
UFO01745.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha44-RB | 1431 | CG8048-RB | 212..1317 | 9..1099 | 4925 | 97.4 | Plus |
| Vha44-RA | 1470 | CG8048-RA | 157..1262 | 9..1099 | 4925 | 97.4 | Plus |
| Vha44-RC | 2693 | CG8048-RC | 663..1479 | 298..1099 | 3480 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16326507..16326748 | 825..584 | 1210 | 100 | Minus |
| 2R | 25286936 | 2R | 16326974..16327160 | 484..298 | 935 | 100 | Minus |
| 2R | 25286936 | 2R | 16333034..16333190 | 297..141 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 16333276..16333412 | 145..9 | 685 | 100 | Minus |
| 2R | 25286936 | 2R | 16326810..16326909 | 584..485 | 500 | 100 | Minus |
| 2R | 25286936 | 2R | 16326333..16326430 | 931..838 | 325 | 95.9 | Minus |
| 2R | 25286936 | 2R | 16326182..16326275 | 1020..930 | 310 | 93.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:27:32 has no hits.
UFO01745.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:41 Download gff for
UFO01745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha44-RB | 201..1228 | 1..1020 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:53 Download gff for
UFO01745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha44-RA | 150..1177 | 1..1020 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:05 Download gff for
UFO01745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha44-RA | 150..1177 | 1..1020 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:05 Download gff for
UFO01745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16326493..16326748 | 584..837 | 99 | <- | Minus |
| 2R | 16326811..16326909 | 485..583 | 100 | <- | Minus |
| 2R | 16326974..16327160 | 298..484 | 100 | <- | Minus |
| 2R | 16333034..16333187 | 144..297 | 100 | <- | Minus |
| 2R | 16333278..16333419 | 1..143 | 97 | | Minus |
| 2R | 16326333..16326430 | 838..931 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:53 Download gff for
UFO01745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12213838..12213935 | 838..931 | 95 | <- | Minus |
| arm_2R | 12213998..12214253 | 584..837 | 99 | <- | Minus |
| arm_2R | 12214316..12214414 | 485..583 | 100 | <- | Minus |
| arm_2R | 12214479..12214665 | 298..484 | 100 | <- | Minus |
| arm_2R | 12220539..12220692 | 144..297 | 100 | <- | Minus |
| arm_2R | 12220783..12220924 | 1..143 | 97 | | Minus |
