UFO01746.5prime Sequence
1172 bp (71 high quality bases) assembled on 2008-10-27
> UFO01746.5prime
CAATCCACATGACGGGAATAATTTCGATCGTAACGAGACGGCTGCCCCAA
ACTTTGGGAATGCGAGCCCTGCGGAGTAATGAGGTAAAGCGCTGCATCCG
CCAATATTCTCGGTTAGTTGCCTGCGCCGCCCACCAGCTCCAACTGCTTC
GCCAGGATGGCTCGAATCGCTGCCAGGAGGCCACCACGCTTCTCACCTGG
CAGGGAATCCACACCACGTCAAGCTTGTGGTCGGAGCACACCGTCAATGT
GCCTCCCTTTGCGGACTCCATTGACGAGGGTGACGTCTAGTTTACTTGAT
AGGTGGGTGACTCCTTCACCTCTGACGAGGCTGTCATGGAAATCAAGACC
GACAAGACAACTGTGGCTGTGCCGGCTCCCTTCTCCTGAACTCTGACCGA
CGTTCTGGTGAAGGATGGCGACTCCGTCGAGCCCGGCCAATCTCTGTTCA
AGATTAAGCCCGGTGCAGCGCCCGCCAAGGCAGCTGCTCCAGCGGCTGCT
CCTGCGCCTGCTGCCCCAAAAGCATCAACAGCTCCAGATGCTGCAGCCAA
GCCGGCACCTCCACCACCTGCGGCCGGCACAACAAAGCCACCACCACCGC
CACCACCAAAGGCAGCCCCTCGACCACCGCCACCTGCTCCAGTGGCTGCA
CTCAAAACGGCCGGCTCGCATGTGAATGTGCCCCCAACAGACGGATCCCG
CCATATCCTACGCACTAGGTCCGAGCAGCGTGTCGATATGAACCGCATGC
GTCTAAAGATTGCCGCCCGCTTGAACGATGCCCAGACACATGTGTCGTGC
TCACACTTTCAACACGTTGATATGAGCTATGCACTGGACTTCAAAAGATA
ATCTGGATGCGTTCACTATAAGTATGATATTAGGTTTCGATCATGTCGAT
CTTCGCAAGGCTAGTGCCTATGCGCTGCTTGATCAGCCCGTAATTACGCG
TCATCGATGGCACGACGTCTGTATCACGACTAGATGACTCTCTGTGGCGG
GCTACGCCCCATGATTGGGTGTCACCGCTTACGCACGGGTAGGCGGGAGC
ATGGCGTACTCGGATTCCCATGACTGCTACCAATAGGCAAGTCGGAGAAG
TACTGCTATCAGCTTGAACTGACGTGACTACTAGCATGCGGATGCTGTAT
CTCGAGTGTACCCATATATATG
UFO01746.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5214-RA | 1817 | CG5214-RA | 141..1167 | 9..1018 | 3690 | 91.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11245121..11245660 | 290..826 | 1920 | 91.7 | Plus |
| 3R | 32079331 | 3R | 11244785..11244889 | 82..186 | 480 | 97.1 | Plus |
| 3R | 32079331 | 3R | 11244945..11245048 | 188..291 | 430 | 94.2 | Plus |
| 3R | 32079331 | 3R | 11244442..11244521 | 9..88 | 400 | 100 | Plus |
| 3R | 32079331 | 3R | 11245764..11245859 | 850..942 | 240 | 90.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:18:30 has no hits.
UFO01746.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:57 Download gff for
UFO01746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5214-RA | 154..1144 | 1..982 | 91 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:59 Download gff for
UFO01746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5214-RA | 136..1126 | 1..982 | 91 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:01 Download gff for
UFO01746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5214-RA | 136..1126 | 1..982 | 91 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:01 Download gff for
UFO01746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11244437..11244516 | 1..83 | 95 | -> | Plus |
| 3R | 11244787..11244890 | 84..187 | 96 | -> | Plus |
| 3R | 11244945..11245046 | 188..289 | 94 | -> | Plus |
| 3R | 11245121..11245660 | 290..826 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:59 Download gff for
UFO01746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7070159..7070238 | 1..83 | 95 | -> | Plus |
| arm_3R | 7070509..7070612 | 84..187 | 96 | -> | Plus |
| arm_3R | 7070667..7070768 | 188..289 | 94 | -> | Plus |
| arm_3R | 7070843..7071382 | 290..826 | 91 | -> | Plus |
