UFO01748.5prime Sequence
1171 bp (998 high quality bases) assembled on 2008-10-27
> UFO01748.5prime
CAGTCGACATGGCTTCCAACTCAACGAAGAAAAGCAAACCGAGCGGTATG
CGCATATTGTGGATACCGGGCCGAAAGTCCCATTCCAAGGGTCGTTTTAA
TGCCACCAACAAGCATATCTCGTACTCGGGTCCACAGAAAAAGAGCGAAG
TATGGTCCTTGGGCGGCAGCAAGGCTCAGGCCGAGCTGATTGATTTTCCC
TCCACCGATTTGTCTGCCAACTCACCATCATCGTCGCTGAGCATTGTGGC
CACCTGTTCGCTGGTTCAAGGATGCGCAAACAGCGATAGAGCATCCTCTG
AGGACTTGGCCATCGTTTCGGAGACTGCCACACTGCCGACTACGCCTGTG
AGCCCGAACTCACCGATCCCGTATAGTCCTACTTCCGAGACTGCAACCGC
ATCCACGCGAGCCATGACTTCGCCCAGCGTGATCACCACCGTTGTAATAC
AGGACTTGCACAACTTTGTAAGCCCCGAGGATTTGCCGAAGGTGCCAAGT
TTTCCAGCAGCACAGGACACCGATGTGGTGCTAAATAGCTCTGCGGGAAC
CACAGCATCGATAGCAACCGATTCTTCGCCACTGGCTAATCATAAGCCGG
GCTCGTCGCCGCCCGCATCACATTCCCAGCAAACAACGCCACAGAAAAGT
AGATATAAGAACCACAACAACAATCAGGAGGATATCAATTCGATCGAAAC
CATTTCCAGTTTAACCAGGTTTCAGGGAAACGCCACAGACTTCGATTGTA
TCGACGAAATGGTGGGACAGCGAAACACCAACGAACTGATACATGCGAAT
AAGCGAAAGATGTCCAAAAAGGTGGAGGGCCTGCCGCCGACCAGTTGGAT
GCCAAATCGTTAGGCTATGACAATGACAAGGCCAAATTGATCGCAAGGAG
TACGATGACACGATGAGAAAGTCGTAAATGCTGTACTACTCACTGATGTG
CTGCGACTGTACTAAATCTGCAAGCTTTCTAGAACAATTCGTTTGGCGCC
GCGGGCCAGGTAAGTGGTCATAATCATATCATAATCATAATCTAATCCCA
ACCTAGCCTAAGGAGATTCTGTCATGACTATGGCTTGAATTTCAACCAAT
AAACCCGGCGCACGAGCGTTGAACACTCCGAATGAATCTTAAGGCCTTAC
TGATCCTATCCACCGGAGGTC
UFO01748.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9992-RC | 1340 | CG9992-RC | 68..1033 | 9..969 | 4675 | 99.3 | Plus |
| CG9992-RE | 1380 | CG9992-RE | 108..1073 | 9..969 | 4675 | 99.3 | Plus |
| CG9992-RD | 1608 | CG9992-RD | 336..1301 | 9..969 | 4675 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16382906..16383167 | 458..197 | 1310 | 100 | Minus |
| X | 23542271 | X | 16382261..16382565 | 969..670 | 1230 | 97.4 | Minus |
| X | 23542271 | X | 16382624..16382844 | 678..458 | 1105 | 100 | Minus |
| X | 23542271 | X | 16383324..16383511 | 196..9 | 940 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:09:53 has no hits.
UFO01748.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:54 Download gff for
UFO01748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9992-RE | 108..1076 | 9..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:40 Download gff for
UFO01748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9992-RD | 332..1304 | 4..973 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:01 Download gff for
UFO01748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9992-RD | 332..1304 | 4..973 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:01 Download gff for
UFO01748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16383324..16383515 | 4..196 | 98 | | Minus |
| X | 16382266..16382557 | 678..964 | 97 | <- | Minus |
| X | 16382625..16382843 | 459..677 | 100 | <- | Minus |
| X | 16382906..16383167 | 197..458 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:40 Download gff for
UFO01748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16276299..16276590 | 678..964 | 97 | <- | Minus |
| arm_X | 16276658..16276876 | 459..677 | 100 | <- | Minus |
| arm_X | 16276939..16277200 | 197..458 | 100 | <- | Minus |
| arm_X | 16277357..16277548 | 4..196 | 98 | | Minus |
