UFO01749.5prime Sequence
1139 bp (985 high quality bases) assembled on 2008-10-27
> UFO01749.5prime
CAGTCGACATGGAACACTTTCATCAAATACAGCAATTGGCTGCTCAGCAA
CAACAACAAGTACAACAGCAACAGTTGCAACAACACCAGGTGGTCGTCCA
GCAGAATCAGCAGCAGGCGCACCAGAACAGCTCCAATACCACAGCCGGCG
TGGGCACCCAACAGCTGTTCACATACAAAATGGCCAGCAGTTTTCCGAAT
CCGGCCACGACGATGGCCCAAGTGGTGGCCACATCGAACGCAGCCGGCAC
CACGGGCTATGATTATCGTCTAAATATGGCACAGGCAGCAGCAGCAGCAG
CCGTACCCGGCTCCCAGTGGTGGTATTCGGCCGCCAATCAGGGACAGGTC
GATGCTAATACAGCGGCGCAACTGCAGCACCAGCAGCAGCAACAGCAGCA
GCAACAACAGCAGCAGCAGCAACAGCACCAGCAGCAACAACAGATGCAAC
AGCAGCAGCAGCAACAGAATGTCATCAATTCGGCGAGCCCCATGAGCAGA
GTCAAGGCCGATGCCAAGCCCAGAGGCCGAATGACCGCCTACGCATACTT
TGTACAAACTTGCAGAGAGGAGCACAAAAAGAAGCATCCCGATGAGACGG
TGATATTCGCCGAATTCTCGCGGAAGTGCGCCGAACGGTGGAAGACAATG
GTGGACAAGGAGAAGAAGCGCTTCCACGAAATGGCCGAGAAGGACAAGCA
GCGATATGAGGCGGAAATGCAGAACTATGTGCCGCCCAAGGGAGCGGTTG
TGGGACGCGGCAAGAAGAGGAAACAGATCAAGGACCCCAATGCTCCAAAA
CGTTCATTGTCTGCGTTCTTCTGGTTCTGCAATGACGAGAGAAATATGTG
AAGGCACTTAATCCGAGTTCGGAGTGGGCGACATCGCCAAGAGCTGGGAC
GAAGTGTCCGATGTGGATCCCGAGTCAAGCAGAAGTACGAGTCGATGGCC
GAGCGGGACAGGCTCGATATGAACGCGAGATGACCGAGTACAGAACGAAG
CGGGAAAATAGCCATGTCCGCACCGTCGATGCAGGCGTGATGCAGGGCAG
TCAAAGCGCGTTACTGCGCGTTCCAGACAACCAGACTGAAAGCCGACACA
GACGGTATGGATGATGACGAACAGCAGCCTCTGACCATC
UFO01749.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsp1-RC | 4511 | CG12223-RC | 718..1762 | 9..1046 | 4900 | 98.5 | Plus |
| Dsp1-RA | 3990 | CG12223-RA | 197..1241 | 9..1046 | 4900 | 98.5 | Plus |
| Dsp1-RB | 3915 | CG12223-RB | 122..1166 | 9..1046 | 4900 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16336288..16336743 | 30..485 | 2235 | 99.3 | Plus |
| X | 23542271 | X | 16337084..16337251 | 643..810 | 840 | 100 | Plus |
| X | 23542271 | X | 16336850..16337009 | 485..644 | 785 | 99.4 | Plus |
| X | 23542271 | X | 16337381..16337556 | 809..977 | 520 | 94.3 | Plus |
| X | 23542271 | X | 16337625..16337685 | 977..1038 | 230 | 95.2 | Plus |
Blast to na_te.dros performed 2014-11-28 20:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2854 | 13..469 | 336 | 56.8 | Plus |
UFO01749.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:36 Download gff for
UFO01749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RC | 713..1773 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:10 Download gff for
UFO01749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RB | 117..1177 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:49 Download gff for
UFO01749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RB | 117..1177 | 1..1056 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:49 Download gff for
UFO01749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16337086..16337249 | 645..808 | 100 | -> | Plus |
| X | 16337381..16337555 | 809..976 | 95 | -> | Plus |
| X | 16337625..16337705 | 977..1056 | 91 | | Plus |
| X | 16336291..16336743 | 33..485 | 99 | -> | Plus |
| X | 16336851..16337009 | 486..644 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:10 Download gff for
UFO01749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16230324..16230776 | 33..485 | 99 | -> | Plus |
| arm_X | 16230884..16231042 | 486..644 | 99 | -> | Plus |
| arm_X | 16231119..16231282 | 645..808 | 100 | -> | Plus |
| arm_X | 16231414..16231588 | 809..976 | 95 | -> | Plus |
| arm_X | 16231658..16231738 | 977..1056 | 91 | | Plus |
