UFO01754.5prime Sequence
1137 bp (981 high quality bases) assembled on 2008-10-27
> UFO01754.5prime
CAGTCGACATGCCGCGATATAGGGAGTGGGACTTGGCCTGCAAGGTGTAC
GTGGGAAACCTGGGCTCCTCGGCGTCCAAGCACGAGATAGAAGGCGCATT
TGCCAAATATGGACCCCTGCGAAACGTGTGGGTGGCCCGCAATCCACCAG
GTTTCGCCTTTGTCGAATTTGAGGATCGCCGTGACGCGGAAGACGCAACG
CGTGCCCTGGACGGAACACGCTGCTGCGGCACCAGGATTCGCGTAGAGAT
GTCTTCGGGTCGCTCGCGCGATCGCCGGCGCGGAGAAGGCGGCAGTAGTG
GTCGCTCTGGTTCCGGACGCTACAGGATAACTCCTTCGGCTAGAACTACT
TCCACTGCTACTTCTTCCTTCTACAACATCAACAATCTACAACAGCAACC
ATCTTCACAGCCACAGCCAGCAACCTTCAACTTGCAACTCGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTC
TGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGG
AGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGC
AGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAA
ACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTG
CGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATAT
TGGCCACGTTTAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGA
CGAAAAACATATCTCATAAACCCTTTAGGAAATAGGCAGGTTTCACGTAC
ACGCCACATCTGCGAATATATGTGTAGAACTGCGAATCGTCTGCATTCCC
TCCGAGCGATGAATCGGTCAGTTGCTCATGAACGTGTAACAGGTGAACCT
ATCGAATAACAGTTACGGCTTCATGCACGATTCCGGATGAACGTCTCAGG
CCAATGTAATATGCGTAACTGCTATCTACGCCTTAAG
UFO01754.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbp1-RD | 1528 | CG17136-RD | 149..580 | 9..440 | 2145 | 99.8 | Plus |
| Rbp1-RA | 773 | CG17136-RA | 149..466 | 9..326 | 1575 | 99.7 | Plus |
| Rbp1-like-RC | 1456 | CG1987-RC | 208..434 | 27..253 | 475 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10784607..10784924 | 9..326 | 1575 | 99.7 | Plus |
| 3R | 32079331 | 3R | 10785400..10785517 | 323..440 | 590 | 100 | Plus |
| X | 23542271 | X | 13384444..13384670 | 253..27 | 475 | 80.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:53:58 has no hits.
UFO01754.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:30 Download gff for
UFO01754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp1-RD | 133..570 | 9..448 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:59 Download gff for
UFO01754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp1-RD | 149..586 | 9..448 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:29 Download gff for
UFO01754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp1-RD | 149..586 | 9..448 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:29 Download gff for
UFO01754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10785403..10785517 | 326..440 | 100 | == | Plus |
| 3R | 10784607..10784923 | 9..325 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:59 Download gff for
UFO01754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6610329..6610645 | 9..325 | 99 | -> | Plus |
| arm_3R | 6611125..6611239 | 326..440 | 100 | == | Plus |
