UFO01755.5prime Sequence
1160 bp (1008 high quality bases) assembled on 2008-10-27
> UFO01755.5prime
CAGTCGACATGGAGTACCTGAGCTACGTGTACGAAAAAATCTTCGGGGGC
AATCCTCCCACGGATGACACGCAAGGGGCTTTCCACACGCCCCGCAAGGT
CATCTGCTTCGGCAACGTCCTGCTCGACCGACTAGTCCAGCTCGAGGATC
CCCAACTCCTGGAGCGGTTCGGCCTGGAACTGGGCTCCAAGGGTGAACTG
GACATGGAGAAACTCAACCAGCTGGCAGCGGAGGCTTCTGAGAGCTCTCG
GTGCCTTACAAACCCGGGTGGCTCTGCCCTCAACACTGCCCGCATCCTGA
AGCAGCTGGGCACAGACGCGCTCTTCTTTGGCGCCGTGGGAGCCGACAAG
CACGCCGAGGAGCTGCGCCAGATCATTCGGGATCGCGGCATCGAGGCCAG
GCTGCAGACCGTCGAGGATGCGCACACAGGGCAGTGCGTGTGCCTCATGT
ATCAGGACAACCCCACGCTGTACGCCAACATCGGCGCCTCGGCTCAGTTC
GAGGTGCAGACCCTGAGCCACGCCGTCAGCCACGAAGGCCAGAGCTTCCT
GCGACCGGTGGAGCGCAAGCAAATCCTGTACGTGGAGGGCTTCTTTGTGC
CCCAGAGGAGTGATGTGTGCGATTACATAGTGCAGCACCTGGTGCGGGAG
CGGCGACGCCTGGCTCTCAATCTCAGTGCACCCTACATTGTGAGGAAAAA
TCACCAGGCTATGATGAAGCTGGCCCGGGCCGCCTTCTTCCTGTTCGGAA
ACCGACAGGAGTTCGAGGCGCTGGCCGAGGCTGCGGGTGGGTTCCGAAAC
GTCGACGAACTGGCGGATCATCTCCTGCAATCCGGTGGCACCAACGTCAT
CTTCGTCACCAACGGCAGTGCCGGCGTCCAGTGATCACCAACTACGTGGA
GGAGCTGGCTCCTCCCGGACCCGTAGCTTTGAGACTTCAGGCGCAGCGCG
TAAGCAGCTGTGATGCCACTGGGGCCGGAGATGCTTTTGTGCCGATTCTT
GCACGCCTGCTGGAAACGCTCGCTGGCGAATGCATCCGAATGACTCCACC
GTACCGCCAGTCGTCACCAGGTGGCTGCAATTGCCGCAGCCTTCTAGAAC
ATCCTGGCCGGCAGTAACGTCCTATCTAGCTAATCGATGCTATCCCACAC
AGCCATAAGA
UFO01755.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ady43A-RA | 2203 | CG1851-RA | 476..1567 | 9..1081 | 4935 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7243742..7244517 | 1009..243 | 3455 | 98.5 | Minus |
| 2R | 25286936 | 2R | 7244988..7245143 | 244..89 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 7245221..7245301 | 89..9 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:53:46 has no hits.
UFO01755.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:29 Download gff for
UFO01755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ady43A-RA | 452..1523 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:51 Download gff for
UFO01755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ady43A-RA | 470..1541 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:22 Download gff for
UFO01755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ady43A-RA | 470..1541 | 1..1059 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:22 Download gff for
UFO01755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7243686..7244515 | 245..1059 | 97 | <- | Minus |
| 2R | 7244988..7245143 | 89..244 | 100 | <- | Minus |
| 2R | 7245222..7245307 | 1..88 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:51 Download gff for
UFO01755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3131191..3132020 | 245..1059 | 97 | <- | Minus |
| arm_2R | 3132493..3132648 | 89..244 | 100 | <- | Minus |
| arm_2R | 3132727..3132812 | 1..88 | 95 | | Minus |
