UFO01756.5prime Sequence
1156 bp (988 high quality bases) assembled on 2008-10-27
> UFO01756.5prime
CAGTCGACATGCTAAATGCCAAGATCGGGAAGGTCGGCAAGGTACTGGTG
TGCGGGATGAAGGGCGTGGGCAAGACGGCGCTGATAGAGCAGCTGGTCTA
CGGCCACGTCAATCCCGAAACGGAACTGCATCCAACCATTGAGGATATCT
ACGTGGCCAGCGTGGATACAGGCAGGGGCGGAGCCCGAGAGACCCTGCGC
ATCTACGACACGGCCGGATTGCAGGGCGAGCAGCAGCAGCTGCCACGCCA
CTACCTTCAGTTTCCAGATGCATTCGTTCTGGTCTACGATCCCATGGATC
CGCGCAGCCTTGACATGCTGGCCGACATCAAGGCTGACATTGAGAAGCAC
AAGGAGAAGAAGGAGATTCCCGTTGTGGTGCTGGCCAACGTGAGGGCACG
AGCAGCCCCAAATCCCGTCGAGAAGGTCATGGACCGCGCCAACATCTGGT
GCCAGCGAGAGCGCATAAAGCACTACACGGTGAACGCCATGGAGCGTCCC
TCCCTCTACGAGCCATTCACCACGCTCTGCGCCCGGCTGCACCCAATGCA
GACGAAGAGCACGTTCCCTCAGCTGCGCCAAGTTATGCAGAACCGGCAGA
AGAGCGAGGCTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAGCATTCTGCG
ACATGGAAGCCATCACAAACGGCATGATGACTGATCGCAGCGGCATCAGC
ACTTGTCGCTGCGTATATATTTGCCCATGGTGAAACGGGGCGAGAGTGTC
ATATTGCCACGTTTAATCAGACCTGGTGACTCACCAGATGCTGAAACGAA
AACATTTCCATACGTAGAATGCAGGTACCGTAACCGCCACTCTTGAAATT
GGTAACTGCGCGAGTCCTGGATACCTCTCAACGTAGTAAACGTTCAATTG
GTCTCT
UFO01756.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30503-RB | 1842 | CG30503-RB | 98..700 | 9..611 | 3015 | 100 | Plus |
| kappaB-Ras-RB | 1842 | CG1669-RB | 98..700 | 9..611 | 3015 | 100 | Plus |
| kappaB-Ras-RC | 933 | CG1669-RC | 98..700 | 9..611 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7445029..7445518 | 611..122 | 2450 | 100 | Minus |
| 2R | 25286936 | 2R | 7445581..7445695 | 123..9 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:00:06 has no hits.
UFO01756.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:27 Download gff for
UFO01756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kappaB-Ras-RA | 67..674 | 9..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:39 Download gff for
UFO01756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kappaB-Ras-RA | 98..705 | 9..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:29 Download gff for
UFO01756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kappaB-Ras-RC | 98..705 | 9..618 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:29 Download gff for
UFO01756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7445024..7445517 | 123..618 | 99 | <- | Minus |
| 2R | 7445582..7445695 | 9..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:39 Download gff for
UFO01756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3332529..3333022 | 123..618 | 99 | <- | Minus |
| arm_2R | 3333087..3333200 | 9..122 | 100 | | Minus |
