UFO01758.5prime Sequence
1169 bp (962 high quality bases) assembled on 2008-10-27
> UFO01758.5prime
CAGTCGACATGGCTCCTAAGAAGCATAGTGGGTTTATGATGTTCGTAAAC
GAGTGGAGAAACCGGAACGCCGAGGGCCGACGCATGACGCTGGCGCAGGC
TGTTTCCCACTGCGGCACCATATGGGAGAAAATGAACACCCAGCAGCGTG
GTCCGTACAACTCAGGCGGCAAGGACGCAAATGTGGCGCAACGCGCCAAA
AGGGAAAGTTCCAACGGCCACGGCCAGGTGGACAAGGCCCAAAGGGAGGC
CACCGAGAGCTTGATGGACATGAAACGTACCATCGAGCGCCTCGTGCTAA
ACGCCAAGATGTCCCATGATCTGGAGAATGCCAAGTTTGTCTTCGTTGCC
TTCAACTACTTCACTAAAGCCTTGACCACCGACGTCTATGTGCCCGCCGA
GTTTGCGGCATGCGAATATTCGTTGAAGGAGGGAATCCGATCCATCTACA
GCACCATGATTGACCCCGGTCAGATCATTTTTGGGCAAGGTAGCGATGCC
CTGCTTCACTCTTCAACCACTCACGACCTGCCGCTGCCGCCCAACGCGCT
GGGGGAGAAGAACATGACCAAGCTGTACCGCAACATTGTTGACTACTTAT
CCAAATGCCAGGGAAAAGGCAAGACCCTAGTAGTCTTTACACCCGCCGAA
AATATTACCATGGTGAAGTCATGCTTCCGCTATTTGGAGTGCGATGATGA
CTTCAGGGACGGGGGCGAAAAAATCCAGGTGTTTGATATCCAGTACTTGC
TATTCATATTGAAGATGAGGTCATGAATGTCGCTGATTTGAATGACGAGA
AAATCAACAAATTCGCGACGGATGCTTTTTTTAAGAAAGACTTTTTCGAG
TTTACCGCAGGATTGCGTGTCAGTACCACGAGGATATGATCGACCAAGTA
CTGTACCCAGAGTATGGTGACTAGATGGGCGTATACCTTCACCTGATTTT
ATGTGCGGAGACTGTATAACGTCCAACCCGGAAAGCACATACTGCCCAAC
AAACCCACTACTTAATCATAAGCTCGTACGCCTCCTCACTCGACACGAGT
CCCCCTCGACTCTTTTTATTCGCTCCGGGATTGAGTCAGAAGAAGCACGA
GCTGTTCCTTCAGAGTGCAATTCGGTCACTAGTCCTAAGCATAGAACGAC
TTTCTTTGTGGCATTAACC
UFO01758.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mael-RD | 2143 | CG11254-RD | 647..1725 | 9..1074 | 4960 | 98.1 | Plus |
| mael-RB | 1830 | CG11254-RB | 334..1412 | 9..1074 | 4960 | 98.1 | Plus |
| mael-RA | 1759 | CG11254-RA | 263..1341 | 9..1074 | 4960 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22724985..22725542 | 318..873 | 2675 | 99.5 | Plus |
| 3L | 28110227 | 3L | 22724738..22724929 | 127..318 | 960 | 100 | Plus |
| 3L | 28110227 | 3L | 22724566..22724685 | 9..128 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 22725602..22725816 | 871..1074 | 435 | 89.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:33:51 has no hits.
UFO01758.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:40 Download gff for
UFO01758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mael-RA | 254..1357 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:46 Download gff for
UFO01758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mael-RA | 255..1358 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:35 Download gff for
UFO01758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mael-RA | 255..1358 | 1..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:35 Download gff for
UFO01758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22724558..22724685 | 1..128 | 96 | -> | Plus |
| 3L | 22724740..22724929 | 129..318 | 100 | -> | Plus |
| 3L | 22724986..22725542 | 319..873 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:46 Download gff for
UFO01758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22717658..22717785 | 1..128 | 96 | -> | Plus |
| arm_3L | 22717840..22718029 | 129..318 | 100 | -> | Plus |
| arm_3L | 22718086..22718642 | 319..873 | 99 | -> | Plus |
