Clone UFO01759 Report

Search the DGRC for UFO01759

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:17
Well:59
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptMyd88-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01759.5prime Sequence

633 bp (402 high quality bases) assembled on 2008-10-27

> UFO01759.5prime
CAGTCGACATGCGCCCTCGATTTGTATGCCATCAGCAGCACTCGGTGGCC
CATTCCCACTACCAGCCCCACTCCCACTTCCATCACCATACCCACCGCCC
ATCCCAATCCGCCCCATCACCATCACATTTACGGCGCCACTGACGTCAGT
TATCGGCGTTATCGCACCGCTGGCATGGTGGTGGCCGAGGGAGTTATGGA
CTCCGGGTCGGGATCGGGCACGGGAACGGGCTTGGGGCACTTCAACGAGA
CCCCATTATCCGCACTGGGCATCGAGACCCGCACCCAGCTGTCCCGCATG
CTGAACCGCAAGAAGGTGCTGCGATCCGAGGAGGGCTACCAGCGGGACTG
GCGCGGCATCTCGGAGCTGGCCAAGCAGAAGGGATTCGTCGACGAGAACG
CCAACAATCCCATGGATCTGGTGCTGATCAGCTGGAGCCCAGCGGAGTCC
CCAGACCGCCAAGGTGGGCATCTGAAAACTTCCGGGGGATTTTCGATCGG
TGGGACCTCTGCGACGATATCACGGAAATCTTGGGCAGACACACAGGTTC
TTCTTGAACAGGACAGCGACGACGGTCCCGTGAAGGCTGTCGCGCCCCAG
CGATGTTGGGACCACACACTAGAGGAGAAACAT

UFO01759.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
Myd88-RC 2424 CG2078-RC 595..1107 9..521 2400 98.3 Plus
Myd88-RB 3613 CG2078-RB 929..1441 9..521 2400 98.3 Plus
Myd88-RA 2758 CG2078-RA 929..1441 9..521 2400 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9307282..9307794 521..9 2300 98.3 Minus
Blast to na_te.dros performed on 2014-11-28 20:42:15 has no hits.

UFO01759.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:38 Download gff for UFO01759.5prime
Subject Subject Range Query Range Percent Splice Strand
Myd88-RA 874..1411 1..537 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:09 Download gff for UFO01759.5prime
Subject Subject Range Query Range Percent Splice Strand
Myd88-RA 920..1457 1..537 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:18 Download gff for UFO01759.5prime
Subject Subject Range Query Range Percent Splice Strand
Myd88-RA 920..1457 1..537 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:18 Download gff for UFO01759.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9307265..9307801 1..538 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:09 Download gff for UFO01759.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5194770..5195306 1..538 96   Minus