UFO01760.5prime Sequence
1147 bp (1024 high quality bases) assembled on 2008-10-27
> UFO01760.5prime
CAGTCGACATGTCGATCGCCAGTGTTCACGGTCCCCAAATCGCCGACATC
TGCAGTCCCCTGTCGCATCACAATCTCGGTCTGTCTGCCTCGCTGCCAGA
TCTGGTGGGCAGTCCCCTGGAGATCAGCATGGACAACGTGCTGACCATTG
AGGAGCTGCGCCAGCACATGGGCTCCTGCTTCACCTGCGGCGTCTCCTGG
ACGGACGACCATGTGTCCCTCGACTGCAGCGAATGCGGTGGCTACAGCCT
GGAGCGTCCCTGTCCCCTGTGCGACGGCCAGTGCGGTGTCCAATGGAAAC
GTGATTTCGCCATGTCCCATGCCTGCAGTCAAGCTCGCTGGGTGGGCGTG
TGCATCAGCTACCCGGAAGTCGTGGCCGGAGTCCAGTTGCCCGTGGGAGC
AGGCGCTGGAGCCGCCACCTCGTGTGCCGCTGCCGCTGCGAATCAACTGC
GCCTGGCCCAGGAGCTGTGCTCCCGCCTGGAACAGCTGTCCACGTCGACG
GCGAGCAAAAGCGGTCGCATCGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGG
TGAAAACGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCAAACTG
GTGAACTCACCAGGGATGCTGAGACGAAAAACATATCTCATAACCCTTTA
GGAAATAGGCCAGGTTTTCACCGTAACCCGCCATCTTGCGAATATATTGT
GTAGAAACTGGCCGAATCGTCTGATTCACTCGAGCGATGAAACGTTCAGT
TGTGCTATGGAACGGGTGTTACAAGGGTGAACACATATTCTATATTC
UFO01760.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pino-RC | 2130 | CG4710-RC | 535..1047 | 9..521 | 2565 | 100 | Plus |
| Pino-RA | 2079 | CG4710-RA | 484..996 | 9..521 | 2565 | 100 | Plus |
| Pino-RB | 1980 | CG4710-RB | 385..897 | 9..521 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1116441..1116690 | 314..65 | 1250 | 100 | Minus |
| 2L | 23513712 | 2L | 1115737..1115944 | 521..314 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 1117443..1117499 | 65..9 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:13 has no hits.
UFO01760.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:37 Download gff for
UFO01760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pino-RA | 584..1110 | 1..527 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:16 Download gff for
UFO01760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pino-RB | 377..903 | 1..527 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:59 Download gff for
UFO01760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pino-RB | 377..903 | 1..527 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:59 Download gff for
UFO01760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1115737..1115943 | 315..521 | 100 | <- | Minus |
| 2L | 1116441..1116690 | 65..314 | 100 | <- | Minus |
| 2L | 1117444..1117507 | 1..64 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:16 Download gff for
UFO01760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1116441..1116690 | 65..314 | 100 | <- | Minus |
| arm_2L | 1115737..1115943 | 315..521 | 100 | <- | Minus |
| arm_2L | 1117444..1117507 | 1..64 | 95 | | Minus |
