UFO01762.5prime Sequence
1209 bp (864 high quality bases) assembled on 2008-10-27
> UFO01762.5prime
CAGTCGACATGCTGCCTACTTACGAGCGCTTCAGTGATCCCAAAAGCGTC
CTCTTCCGGCTTCCCTTTGCGCGACTGGCACTGGTGGCTCTTAGTTTGCC
CCTGGGAGGCTTCTTCTTCTGCGTGATTTGGTCTCTGACCTTTGACTTCG
TTAGGAGCACCTACACCCACTGCGATGTGACCAACTATCTGCCCTCCGTC
TCGGCGGCCATTGGGAACTATGAGCCCCAAAAAACCGTCTGGAGACTGGC
CATATTTCTGCATTTACCACTCCGTTTGGCAGTTGCCAAAATCTACTTGG
AGCACTATCGGGAACACATCCGCCGGAGCAGAAGATTGCTGGGCATCCTG
GCCTGCTTCTTGAACGTCGTGGAGGATCTGGCCCTCTTCTGCTTGTCGTT
TTGGACCTCTGCGGATCATTACGAGACCCACAGAAACGCATTTGTGGTGT
TCATTGCGTGTTCCGAGTGCTATATGCTGGTTTCCTACCTGCTGAACAGG
AATATACAGAAGACCGTGCTCTTGCCGCACGAGGAGAAGTCGCTGATGTA
CAAGAGAAATCTGTTCTTGGTGAATGTGATCGCCTTTGGCTTGGCAGGAT
ACTGCTTCGTGAGGCACAACTCGCATTGCGAGGCGGGAGTCTATACTTTC
TTCGCGTTGTTCGAGTACATCGTGGTGCTGACCAACATGGGGTTCCACAT
GACCTCCTACTGGGACTTCTACGCCCTGAATGTGGTGTGTGATGCCCAGC
ACGGTCTCTACATATCACAATCGGCAAGCTTTCTAGACCATTCATTTGGC
GCGCGGGCCCAGGTAGTGGTCATAATCTTATTCATAACATAGTCATAATC
ACAACTAGCCTAGGAAATCCTGTCATGACTAGTGCTTGGTATCTCACCAA
TAAGAAAACGCTCGGGCGCCACCGAGCGTTCTGACCAGATCCAGATGGAG
TTCTGAGGTCATTACTGGATCCTATCACACTGGAGCTCCAGCCAGCTCAA
TACCAAATTACCCCCCGCCCTGCCATCCATCCCAAGTACTGTTGTAAGTA
ATTAGCCATCTGGCGACAATTGAAACCTTCACAAACGGCACTGATTGACC
CTGAATCCCCACGGCAATCTCACCTGTGCACTGGCATTAATTATAGGGAA
CCGGGCCAAAGACTTGTCCATTATGGGCGCCAGATACATCACAACTGCGG
TGAGCATAC
UFO01762.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3876-RA | 1370 | CG3876-RA | 175..939 | 9..773 | 3780 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 818704..819334 | 639..9 | 3140 | 99.8 | Minus |
| 2L | 23513712 | 2L | 818510..818645 | 773..638 | 650 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:20:10 has no hits.
UFO01762.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:19 Download gff for
UFO01762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3876-RA | 151..923 | 1..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:57 Download gff for
UFO01762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3876-RA | 167..939 | 1..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:53 Download gff for
UFO01762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3876-RA | 167..939 | 1..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:53 Download gff for
UFO01762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 818510..818643 | 640..773 | 98 | <- | Minus |
| 2L | 818704..819339 | 1..639 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:57 Download gff for
UFO01762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 818510..818643 | 640..773 | 98 | <- | Minus |
| arm_2L | 818704..819339 | 1..639 | 99 | | Minus |
