UFO01764.5prime Sequence
1151 bp (910 high quality bases) assembled on 2008-10-27
> UFO01764.5prime
CAGTCGACATGGATTCCAAAGTGGGTGCAGATCCTAGTTCGGCCTACGAC
AAGGAAATCGGCAACAATCTAAACAACGATGATTCCTCATTTCTGGGCAA
CATAATCCGCGAAATCCTGTACAGTCCAATGAACCTGGCCCTCCTGGCCA
TCATCTGCTTCCTGGTCTATAAAATCGTTCGGGATCGCACCGAAGTGCCA
TCCGTGGGCGTTGCAAAGCCATCCGAACCTGAGTTACCCAAAATCCGACG
CGATTTTACCGTGAAGGAGCTTCACCAGTACGATGGAACTCAGCCGGATG
GCCGTGTTTTGGTCGCCGTCAACGGAAGTGTTTACGATGTCAGCAAAGGA
AGGCGTTTTTACGGCCCAGGTGGACCCTACGCAACTTTTGCGGGTAGAGA
TGCCTCGCGAAACTTGGCCACTTTCAGCGTGGTTTCAATTGACAAGGATG
AATACGATGACCTGAGCGATTTAAGTGCCGTGGAAATGGACTCTGTGCGG
GAATGGGAAATGCAGTTTAAGGAAAAATATGAGCTGGTTGGTAAGCTATT
GCGCAAGGGCGAGGAACCAACCAACTATGACGATGATGAGGACGAGGAGA
ATGTTAACAATGATGAACAAGAGCGAAAGAACCTACCCAAGTCGAAAACT
GAGACTGATGACACCAGACAAGAAAAGGAAAGTCACATTGTGCAAAGCAA
TGTAACAAACAAAAATAACGCACAAGATCACGCCACTCCTTCTACCGACT
GTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGATTCTCACTATAAAGACGCCCGGCGGCACC
GAGCGTTCTGATCAATCCAGATGAGTTCTGAGTCATTACTGATCTATCGA
CAGAGTCAAGCGAGCTCGATATTCAAATACGCCCCGTCCTGCCACTCATC
GCAGTACTGTTGTATTCATTAGCATTCTGCGACTGAGCCATCCAAACGCA
TGATGAACTGATGCAGCGATCATACTTGTCCCTGCAAATATTGGCATGTT
AACGGGCAACTGCAATTGCAGTATGACTGGTATCACCTGGATGTCGTTAA
A
UFO01764.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MSBP-RC | 1503 | CG9066-RC | 288..1031 | 9..752 | 3660 | 99.5 | Plus |
| MSBP-RB | 1420 | CG9066-RB | 205..948 | 9..752 | 3660 | 99.5 | Plus |
| MSBP-RA | 1487 | CG9066-RA | 272..1015 | 9..752 | 3660 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15889299..15889662 | 372..9 | 1805 | 99.7 | Minus |
| X | 23542271 | X | 15888039..15888269 | 752..522 | 1110 | 98.7 | Minus |
| X | 23542271 | X | 15888344..15888499 | 522..367 | 780 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:42:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 284..340 | 725..670 | 111 | 68.4 | Minus |
UFO01764.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:18 Download gff for
UFO01764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9066-RA | 255..1002 | 9..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:41 Download gff for
UFO01764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MSBP-RA | 272..1019 | 9..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:08 Download gff for
UFO01764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MSBP-RA | 272..1019 | 9..758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:08 Download gff for
UFO01764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15888035..15888268 | 523..758 | 97 | <- | Minus |
| X | 15888344..15888496 | 370..522 | 100 | <- | Minus |
| X | 15889302..15889662 | 9..369 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:41 Download gff for
UFO01764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15782068..15782301 | 523..758 | 97 | <- | Minus |
| arm_X | 15782377..15782529 | 370..522 | 100 | <- | Minus |
| arm_X | 15783335..15783695 | 9..369 | 99 | | Minus |
