UFO01767.5prime Sequence
1158 bp (989 high quality bases) assembled on 2008-10-27
> UFO01767.5prime
CAGTCGACATGAACCAGAAACATTCCGAACCATTCTACATATCGCCCCGG
CTGTTCGACAACCGTCGTCTCAAGCGGCGCCGCTGTCGGTGGATGGAACG
CCTGCTTGAGCACCAGCGGATCTGCATGGCCCGGATGCGCGACCAAGTGG
CTCTCGCCTCCAAGACTGACCGGCAGCTGTCCCATCTGCAGCGGCGCCAT
GTCGCCTCCACTTTGCAGCCGGACGTGACCATCGACCTGCTGTCGGATGA
CGATGAGACCCCATCGGCCGGACAGCCCGCTGCAGCTGGCCACAATCGCC
TCCTGATTCCTGCCCCAGGGCACCGAGCACATAGAACGGGCAGAAGGCAG
GCGCCGCGCAGAGCTGCCACCCACTCATACCCAGTGACCGACAGCATCCT
GATAACCAGCGATGACGAGCACAACGAGCAGGAACCCAGCAGCACGGCAA
GAGTGCGCTCCCAGCTCTCCATGCGCTCACCGCCACCGCTCGCACCGCTC
ACACAGTCGGAGACCATCGAAGAGGTAACTGTTTCGTTGGTGCCGCGCAC
CTCCACCACTGCCAACTGCCTGACGCGGGTGTCAGGTCACCCCAAGCCGT
GTCGAGCGTCGACGGCGGCCAGCAATGGATTCGCCACCGCCGAAGGCGGA
GAGGGCGGCAATGAAACGGGCTGTTTTCTGGAGGTGGACGTGGGCGGAGG
CATCACAGCCACGCTGCCGGACGAGACGACCGTTCACACGGTCATCGCAA
ACCGTATTTACGAACTCTCGCTGAGCAAACTACGCGAAGGCCTGGCTTTT
AGTGAGTGCCGGATACACGAACGACCTGATGCCGGAGCAGCTGCAGAAAC
TGTCACCGGCATTGCGCGCCAAAGTGGCGCCCTTGGTGGCTCCCTCGCCG
CCCACGCCCATCTCCTAAACTGTCCAGCGACCTCAGCATATCACTGATCT
CAGACGAAGACGATTGCGAAAGCACCGGTTCCACATGTCACGGAGGGTCC
GCACGAACCGGTGCACCCCGTCTTGTGCTGCGCGAAGCAACCCTGCCTAG
CTGCTCAGCACACAGCTCAGCTCTCGGGGCACACTGCATACGTCGCGGGA
TCGATCATGCCTTGCTTCGGGGATGACACATTCGATACCTGTGGTTCCGA
GTGTGACT
UFO01767.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| a6-RC | 2047 | CG3771-RC | 348..1372 | 4..1022 | 4915 | 99.1 | Plus |
| a6-RA | 2210 | CG3771-RA | 348..1372 | 4..1022 | 4915 | 99.1 | Plus |
| a6-RB | 2218 | CG3771-RB | 358..1380 | 6..1022 | 4905 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1694453..1695475 | 1022..6 | 4725 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:00:02 has no hits.
UFO01767.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:15 Download gff for
UFO01767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 345..1390 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:37 Download gff for
UFO01767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 345..1390 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:27 Download gff for
UFO01767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 345..1390 | 1..1037 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:27 Download gff for
UFO01767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1694435..1695478 | 1..1037 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:37 Download gff for
UFO01767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1588468..1589511 | 1..1037 | 98 | | Minus |
