UFO01770.5prime Sequence
1147 bp (959 high quality bases) assembled on 2008-10-27
> UFO01770.5prime
CAGTCGACATGTTTCTAATAGCCATTGCCATTATTTTGGCCACCATTTTG
GTGTTCAAGGGAGTGAGGATATTCAACTACATAGACCACATGGCTGGCAT
CATGGAGATGATCCCAGGACCCACGCCATACCCCTTCGTGGGTAATCTGT
TCCAGTTCGGTCTCAAGCCAGCCGAATACCCCAAAAAGGTCCTGCAATAT
TGTCGGAAATATGACTTCCAGGGATTCCGCTCCCTGGTCTTCCTGCAGTA
CCACATGATGCTGAGTGATCCGGCTGAAATTCAGAACATCCTGTCGAGCT
CATCGCTGCTGTACAAGGAGCACTTGTACTCCTTTCTGAGGCCCTGGCTG
GGCGATGGCCTCCTCACCAGTTCCGGTGCCCGCTGGCTAAAGCACCAGAA
GCTCTACGCCCCTGCCTTCGAGCGCTCGGCCATCGAGGGTTACCTGCGAG
TGGTCCACCGGACGGGCGGACAGTTCGTCCAGAAACTCGACGTACTGTCG
GATACACAGGAAGTCTTCGATGCCCAGGAGCTGGTGGCTAAGTGTACCCT
GGATATTGTGTGTGAAAACGCCACTGGGCAGGACAGCAGCTCACTGAATG
GAGAGACTTCGGATTTGCATGGAGCCATCAAGGACTTATGCGATGTGGTC
CAGGAGCGCACCTTCAGCATCGTGAAGCGTTTCGACGCCCTCTTCCGCCT
CACCTCCTACTACATGAAGCAGCGCCGCGCTCTGTCGCTCCTGCGCAGCG
AACTGAATCGGATTATCTCGCAACGGCGACACCAGTTGGCTGCGGAAAAC
ACGTGCCAGCAGGCCAGCCAATCAACAAACCCTTCCTGGACGTCCTGCTG
ACCGCCAAGCTCGATGGGAAAGTCCTCAAGAGCGCGAGATTATCGAGGAG
TGTCCACATTTATATTTACAGGTCACGATCCCATGCCGCGCCATATCTTT
CACGCTGTACCCCTTTCCGTCCTCGGAGAATCAGCAAAAGCTGCCGAGAA
CACGACCCATCTTTGGCAGAACTTCGCGGGGACGGACTGTTCGCTGATCA
ATGCATATCTAAGTGATTATAGGACCTGGCTGACCTTGTCCTGATGTCGA
AAACCGATCTGATTCTGGCAAGGACCAGTCACGGACTGGCCATTTTC
UFO01770.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4ad1-RA | 1698 | CG2110-RA | 54..1089 | 8..1031 | 4850 | 98.6 | Plus |
| Cyp4ad1-RB | 1227 | CG2110-RB | 204..684 | 563..1031 | 2075 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8441382..8441664 | 564..282 | 1415 | 100 | Minus |
| 2R | 25286936 | 2R | 8442587..8442753 | 174..8 | 835 | 100 | Minus |
| 2R | 25286936 | 2R | 8440349..8440512 | 921..761 | 670 | 98.2 | Minus |
| 2R | 25286936 | 2R | 8440571..8440697 | 761..635 | 635 | 100 | Minus |
| 2R | 25286936 | 2R | 8441715..8441825 | 284..174 | 555 | 100 | Minus |
| 2R | 25286936 | 2R | 8440755..8440825 | 634..564 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:35:12 has no hits.
UFO01770.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:25 Download gff for
UFO01770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4ad1-RA | 21..1072 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:16 Download gff for
UFO01770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4ad1-RA | 48..1099 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:03 Download gff for
UFO01770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4ad1-RA | 48..1099 | 1..1038 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:03 Download gff for
UFO01770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8440350..8440511 | 762..920 | 98 | <- | Minus |
| 2R | 8440571..8440697 | 635..761 | 100 | <- | Minus |
| 2R | 8440755..8440824 | 565..634 | 100 | <- | Minus |
| 2R | 8441382..8441661 | 285..564 | 100 | <- | Minus |
| 2R | 8441715..8441824 | 175..284 | 100 | <- | Minus |
| 2R | 8442587..8442756 | 1..174 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:16 Download gff for
UFO01770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4327855..4328016 | 762..920 | 98 | <- | Minus |
| arm_2R | 4328076..4328202 | 635..761 | 100 | <- | Minus |
| arm_2R | 4328260..4328329 | 565..634 | 100 | <- | Minus |
| arm_2R | 4328887..4329166 | 285..564 | 100 | <- | Minus |
| arm_2R | 4329220..4329329 | 175..284 | 100 | <- | Minus |
| arm_2R | 4330092..4330261 | 1..174 | 97 | | Minus |
