UFO01771.5prime Sequence
1149 bp (999 high quality bases) assembled on 2008-10-27
> UFO01771.5prime
CAGTCGACATGAGCAACAGCGAAGGAAGCGGCCACGAAAGTGGAATCCGT
ACACTGAATCGCAATGCGAATGGAAACGGCAATGGAGACCTCAGTCTGAT
GCAGGATCTGCAGCATAAGTACGCCTTCCTCGAGAATCTCTTCAGCAAGT
TCTGGAAGTCTATCATCAAGTCGAATTCCAATCTCAAACTGCAGTTGCGC
AATGTCAAGTGGAAGAATGCCAAGGCGAAGCCCGGCTGTGCCTACCAGCC
AACGGAGATCGAGCAGGTGGCCAATGTGATTACTCACGGCATTTGGATAC
TGCCCGCCGTTTTTGCGGCCATCAAGCTGTTTGAACGCTCCTCCAGCGCC
AGCCAGTATCTGGTTGCTTGGGTCTACGGCGGAGCCCTGTGCATGCTCTT
CACGGTGTCCACCTTCTTCCACTGCTCCTGCTATTGCGCCGAGCACAAAC
CACCGAAGAATGTCAAGGCCTGGCCCTGTCTCGGCTGGCAGACGTATCAG
GGGCTCAAGAACGTGCTCCATCGCTGCGACAGGGCGATGATCTATGTGTT
CATCGCCGGATCGTACTTCCCCTGGCTCACGCTAGAGAACACCGATCATT
CGGCCATACTCTTCTGCATGGAATGGGTCATCTGGCTGATGGCGGGCATA
GGAATTGCCTACCAGCAGGTCTTCCACGAGCGCTACAAGTGTCTGGAGAC
GTTCTTCTATCTGGTGATGGGCCTGGGACCCGCTCTAGTCGTTGTGTTCA
CTGGCCACCACTTCCACGGTATGATGCAGCTCAAGTTCGGCGGCGGCTTC
TACATTCTGGGCATTGTATTCTTCAAGGCGGACGGCACGATACCCATGGC
CCATGCCATTTGGCATCTGTTTGTGGTGCTGGCCGCCGGATGTCACTATT
ACGCCATCCTGTGATCTATATCCAGCGAGGGAGCCGCAGCACCGGCAAGC
TTTCTAGACCATCGTTTGGCGCGCGGGCCCAGGTAGTGTCATAATCATAT
CATAATCATATCATAATCACACTAGCTAGAGATCTGTCATGAACTATGCT
GATTCCCACAATAAAACGCCGGCGGCACCGACGTCTGACATTCATGGATC
CAAGCTCTATCTGATCTATCAAGAGTCCACGCGAGCTCTGAATATCAAA
UFO01771.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4615-RA | 1973 | CG4615-RA | 236..1174 | 9..944 | 4620 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7099377..7099658 | 944..666 | 1265 | 98.2 | Minus |
| X | 23542271 | X | 7100274..7100522 | 257..9 | 1245 | 100 | Minus |
| X | 23542271 | X | 7099725..7099946 | 670..449 | 1110 | 100 | Minus |
| X | 23542271 | X | 7100009..7100201 | 448..256 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:53:40 has no hits.
UFO01771.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:23 Download gff for
UFO01771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4615-RA | 224..1175 | 1..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:44 Download gff for
UFO01771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4615-RA | 227..1178 | 1..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:15 Download gff for
UFO01771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4615-RA | 227..1178 | 1..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:15 Download gff for
UFO01771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7100009..7100199 | 258..448 | 100 | <- | Minus |
| X | 7100274..7100526 | 1..257 | 98 | | Minus |
| X | 7099377..7099655 | 669..944 | 98 | <- | Minus |
| X | 7099727..7099946 | 449..668 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:44 Download gff for
UFO01771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6993410..6993688 | 669..944 | 98 | <- | Minus |
| arm_X | 6993760..6993979 | 449..668 | 100 | <- | Minus |
| arm_X | 6994042..6994232 | 258..448 | 100 | <- | Minus |
| arm_X | 6994307..6994559 | 1..257 | 98 | | Minus |
