UFO01772.5prime Sequence
1134 bp (179 high quality bases) assembled on 2008-10-27
> UFO01772.5prime
CAATCCACATGGGATATGATGACCGTGAACGCGATCGCGAGAGACGCCGA
CATCGTTCCCGCTCTCGGGACCGCCATCGCGAACGCTCCAGGGATCGACG
CCATCCCCGGAACTCGAGGCGCAAGCCGTCGCTTTATTGGGATGTACCGC
CGCCGGGATTCGAGCACATCACCCCGATGCAATACAAACCCTTGCTTGCG
TCCGGACAAATCCCGGCAAGCGTTGTGCCGGATACACCACAAACGGCAGT
GCCCGTGGTCGGATCGACAATTACCCGACAGGCGCGTCACCTGTACGTTG
GCAACATTCCGTTTGGCGTCACCGAGGAGGAAATGATGGAGTTCTTCAAC
CAACAGATGCTTTTAGTTGGGCTCGCCCATACGGCCGGCAGTCCCGTCTT
GGCATGCCAAATTAACTTGGACAAAAACTTTGCTTTCCTCAAATTCCGAT
CGATTGATGAAACCACCCAGGCCATGGCATTCGATGGCATCAATTTGAAG
GGGCAGAGCTTAAAGATTAGGCGTCCGCACGATTACCAACCCATGCCGGG
TATAACAGATACCCCGGCAATTAAGCCCGCTGTTGTTTCCAGTGGAGTTA
TTTCAACAGTGGTTCCGGACTCGCCTCACAAAATCTTCATCGGAGGTCTA
CCAAACTATCTGAATGAGCATCACGTTAAAGAACTGCTTTTGTCGTTTGG
CAAGCTACTAGCCTTCAACCTGGTAAAGATGCCGCTACTGGTTGAGTAAG
GGTTATGCTTTCTGTGAATATGTCATTTTAGCATCACAGATCACTCTATA
GCTGGTCTAAATGGAATGCAGCTAGGTGACAAAAAACTGATTGTCCATCG
AGCCAGTGAGGTCGCCATAATGCCTATACGCGTACAACTCCACGCAGTCC
GTATGCTTCTAGTGCTGGCCTGTTCTATGCGTGACTCTAGACGGCGTACT
GAAGTCTTTGCATGCTCCATATGATCACCGCGAATCACTGCGGCACAGGA
CGAGTACGAGAGATCTGAAGCATTCATGAGACTGCACTAATCCGGAGCGT
GCGGACGGGTAAATTCAAAGTACCATCAGGGCCTCAATCGATGACGCAGG
CCTTGTCGATTCCACCGATTTCAACACTGTAAAG
UFO01772.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2af50-RD | 1473 | CG9998-RD | 163..1176 | 9..1010 | 3945 | 93.4 | Plus |
| U2af50-RA | 1527 | CG9998-RA | 217..1230 | 9..1010 | 3945 | 93.4 | Plus |
| U2af50-RC | 1371 | CG9998-RC | 73..1074 | 21..1010 | 3885 | 93.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16357643..16358207 | 585..21 | 2645 | 97.9 | Minus |
| X | 23542271 | X | 16357481..16357573 | 677..585 | 405 | 95.7 | Minus |
| X | 23542271 | X | 16357296..16357417 | 793..675 | 400 | 94.3 | Minus |
| X | 23542271 | X | 16357145..16357211 | 867..801 | 260 | 92.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:41 has no hits.
UFO01772.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:22 Download gff for
UFO01772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af50-RA | 209..1138 | 1..923 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:59 Download gff for
UFO01772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af50-RA | 209..1138 | 1..923 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:16 Download gff for
UFO01772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af50-RA | 209..1138 | 1..923 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:16 Download gff for
UFO01772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16357295..16357417 | 675..794 | 93 | <- | Minus |
| X | 16357484..16357572 | 586..674 | 95 | <- | Minus |
| X | 16357643..16358219 | 9..585 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:59 Download gff for
UFO01772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16251328..16251450 | 675..794 | 93 | <- | Minus |
| arm_X | 16251517..16251605 | 586..674 | 95 | <- | Minus |
| arm_X | 16251676..16252252 | 9..585 | 97 | | Minus |
