UFO01776.5prime Sequence
1176 bp (1016 high quality bases) assembled on 2008-10-27
> UFO01776.5prime
CAGTCGACATGAGCATGAGCATGGCACCGGCCACCGTCCTCCAGTTGCTG
CGCGGCCTTAGCACGCCGCGTCTTCTTACCCACATCCACCAGCACCGCGC
ATTGGGTAATCACTACCACCACTACCACCAACACTACCAGCACCAGCACC
ACCTCCTCCACCACCAGCAGCAGTACCTCCGACTATTCACTTGCACAGCA
CTGCCAGCGGCTGCTCCGGCGCTCTTCTCGATCCTGCACACAGCGCGTGG
CTACAGCAGCACAACCAAGCAGGAAGCTGGAGCCACTGGCCCCAATGATG
CGCCCGAGGTCGCACCGAATGCCCCGCTGCTGGCCAAGCTCTTTCCTCAG
ACCTCGCCGGAGGTGGACAGCAACGCCGAGCAGGAGCGCAAGAAGCGCGA
GGAGGAGGAGGAAAAGGAGAACGAGCGTGCCTGGAAGCGCATGAAGCTGG
GCTTTGCAATATTCGGAGGCAGCGCCGTGGCTGCTGGATTCTGGGCCGTC
TACGAGTTCGGCAAGCCCGAGGTGGACCCCAACGGGCAGCCCATCGAGGA
CGAGTTCACACACAAGCCGCTGGTACAGCAGTATCTGCAGCGGATGTGGA
AGAGCATTCACTACTATCAGCGCATGATCCAGGAGCCGTCGCGCGCCAAA
CTGCTGCCCGATCCGCTCAAGCCGCCGTACGTGCAGCCGCGCTACACGCT
TGTGCTGGAGATGAAGGACGTGCTGGTGCATCCGGACTGGACTTACCAAA
CTGGCTGGCGCTTCAAGAAGCGTCCCGGCGTCGACCACTTTCTGGCCGAG
TGCGCCAAGGACTTTGAAATTGTCGTCTTCACCGCCGAACAGGGCATGAC
CGTGTTCCCCATCCTGGATGCCCTCGATCCCAACGGCTACATTATGTACC
GCCTGGTCAGGGATGCCACGCACTTTGTGGACGGCCATCATGTGAGACTG
GACACCTTATCGCGACCTCAAGAAGGTGATTGTGTGGACTGGGATGCGAT
GCCACAGGATGCATCCGGACACCATCCGGCTGACCGCTGGCATGGCACGA
CGATGATGCCCACTGGCTGACCTTATCGCTTTCCTAAGATATTGGCGCGA
ACACGTGACGAGGGCGAGTTCATATATGCCGTCGCAGATCCCATCACAGC
TTCGGGAAAAACTAGCCAGCCGTGTG
UFO01776.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ttm50-RB | 1868 | CG2713-RB | 142..1253 | 8..1103 | 5045 | 97.8 | Plus |
| ttm50-RA | 1728 | CG2713-RA | 142..1253 | 8..1103 | 5045 | 97.8 | Plus |
| ttm2-RA | 1513 | CG12313-RA | 769..1054 | 651..935 | 370 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2730984..2731478 | 945..451 | 2475 | 100 | Minus |
| X | 23542271 | X | 2731790..2732049 | 267..8 | 1300 | 100 | Minus |
| X | 23542271 | X | 2731534..2731717 | 451..268 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 275923..276199 | 651..927 | 365 | 75.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:34:22 has no hits.
UFO01776.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:04 Download gff for
UFO01776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttm50-RA | 137..1253 | 8..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:58 Download gff for
UFO01776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttm50-RA | 142..1258 | 8..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:34 Download gff for
UFO01776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttm50-RA | 142..1258 | 8..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:34 Download gff for
UFO01776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2730949..2731477 | 452..975 | 99 | <- | Minus |
| X | 2731534..2731717 | 268..451 | 100 | <- | Minus |
| X | 2731790..2732049 | 8..267 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:58 Download gff for
UFO01776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2624982..2625510 | 452..975 | 99 | <- | Minus |
| arm_X | 2625567..2625750 | 268..451 | 100 | <- | Minus |
| arm_X | 2625823..2626082 | 8..267 | 100 | | Minus |
