UFO01779.5prime Sequence
1162 bp (1012 high quality bases) assembled on 2008-10-27
> UFO01779.5prime
CAGTCGACATGATGTCCCAAATTCCGGATTTGGCCGGCGGAAATGGGCAA
CAGAAGCGAAAGATTCTGAGCGGCGGCGAATACAATAAGATTTGCCGGTT
TATCAACGGCTTCCACGGCTTGGCCATCGACTGCGAGTTCGAGTTGAGGA
ATCGCTTCTTCAGGGACGTGGAGCCAATGGCATTGACATGCATCCTGCAG
TCGGAGCTTTTTAACCGGTCGCGTGGTCACTGGAAGCAGGATCAGCGCGG
GAAAAGGCTTCTCAAAGCCTACGAGGAGCAGAAAAACCTATACTACGACA
ATGCCCTACTGATCCGAATGGCTTGTGCCGAAGCACTGAACCCGGTGGCT
CTCTGCAGGATGTTGCTGCAGGAGAAGTACAAGGATCGGCATCGATCGCA
CATCTCACAGCTTCTTAGGCATCCGCATCTTATCGACGATCCCAAGCTGG
CGGCCAATGTGCAGCAGTGCATAGTCAGCGACAATCAAGAGGGATCCATA
ACGGACCTGCGACGCCGCATAGTTGGCGAGGAGTACGAGCTTAAGCTTAA
GAATCTGGCTAAGGAGGCGGGTATCCATTTCTACGACGAGAAAGATTTGC
GACGCATGGGATATGACAAGACGCCGGACATCAAGATGATCCTGCCATTT
CTTTACAAAGGCTCTGTGATCAACTGGATCGAGAGCAAGGCCAATTTTGG
GGACACCAAGGGACACAAGTCGAACATCCAACAGCAGCTGCAAAGCTACT
GCAATCGTTTTGGTCCTGGAATGATAATCTATTGGTTTGGGTACCACGAG
GAAACGCCTGCGCTGCCGGATAACAACATTGGCATTACAGTACTCGCTGA
TTTTCCGGCAAAGAAGATTTGGGTTTTTATGCAACTCGCGCATGAAGATA
CTCCCGCTGAGACTCCGACACGAAGAGGACAGCAGTTCCGGGAGTCAACC
TATGTAGCTGATGTCACCAAGAACTGAAAAAACTTTCAGCAGCTTTCTAG
AACATTCGTTTGGCGCCGCGGGCCCAGGTAGTGGTCTAATCTTATTCTAA
TCTAATCTAACTCACTAGCTAGAGATCTGTCTGACATGGCTGGAATTCCC
ATAAAGCCGGACAGGCCTGACATCGATGATTCAGGCTATCGCATCTCAAC
GAGTCAAGCGAG
UFO01779.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12713-RA | 1351 | CG12713-RA | 65..1051 | 9..988 | 4680 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15832856..15833344 | 269..757 | 2445 | 100 | Plus |
| 3L | 28110227 | 3L | 15832528..15832787 | 9..268 | 1300 | 100 | Plus |
| 3L | 28110227 | 3L | 15833409..15833607 | 757..953 | 735 | 92.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:59:59 has no hits.
UFO01779.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:03 Download gff for
UFO01779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12713-RA | 63..1062 | 1..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:35 Download gff for
UFO01779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12713-RA | 59..1058 | 1..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:25 Download gff for
UFO01779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12713-RA | 59..1058 | 1..994 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:25 Download gff for
UFO01779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15832522..15832787 | 1..268 | 98 | -> | Plus |
| 3L | 15832856..15833344 | 269..757 | 100 | -> | Plus |
| 3L | 15833410..15833647 | 758..988 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:35 Download gff for
UFO01779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15825622..15825887 | 1..268 | 98 | -> | Plus |
| arm_3L | 15825956..15826444 | 269..757 | 100 | -> | Plus |
| arm_3L | 15826510..15826747 | 758..988 | 95 | == | Plus |
