UFO01780.5prime Sequence
1104 bp (931 high quality bases) assembled on 2008-10-27
> UFO01780.5prime
CAGTCGACATGGACAGCGCCGGTAAAAATCGTTATGAACTTTTGTTCATG
GACGACGATGTCAGCGATCCATTAGATAATCTTGTGGCGCCGACGGCCGC
TGCTGCCGCAGCAGCAGCTGGCAAGAAGAAGCAACCGTCAGCTGCTGCTG
CAGCGGCCACCAAAACGACCGCCAACAAGGTGGCCAACAGCAATAACAAG
GCGAACGCAGGATCCAATATTGGTGGACCCAATGCCAAGAAACCAAATCA
GGCCGAAAAGGAGAACAAGCCCAATAATGCGTTAAACAAAACCGATGGCA
AGAAGTTCACTCCATCGGCCGACAACAAACAGCAGCAGTTCAATAATAAC
GCCAGCAGCAATTACAAACAACAGGGTGCTCCACGGCAAGGAGGTGGCGC
CAACCGAACACGTGAATTTGGTAGCGGTCAAGGACAGGGTCAAGGACAAG
GTGGCCAGCAGCAGCGCAGCGTAAACTTCCGTCAACAGAATGGCAATGCC
GAGACTCGTGAGCAGCGCAACAATCGCCGCAATGTCCGCGAAAACGTCGG
AGCACCCGATGGCCAGCAGTCGCGACCTTACCGCGGACCAGGTGGAGGCC
CAGGTGCTGGCGGAGATCGTCCCCAGCGTCAGAACCGCAACTACGATGGC
CAGAACAGGAAGCGCGAGTTCGACCGCCAGTCGGGTTCCGATAGAACTGG
TGTGAAGTCAATTGACAAACGCGATGGAGCTGGCTCCCACAACTGGGGAT
CGGTCAAGGAGGCTATTGATGATGTGAACAAGAACGAAAGCGAAACCAAT
GTGACCAATGCCGAGGGCGGCGCCAAGGCCGATGATCTGGCACTGACCAC
AAACGAGCAGCTACGCGAGGAGAGCCAAGAGCTGACTTGGACGAGTGAGC
ACAGCAGGACAGCGCATCAGCCACTTTATATCGCAGCTGGAGAGTGAGAC
CCCACCATGAAGAAATGTCGTCTACTAGCACAGAGAGGAGACGACAGCGA
AAGGGCTCGAGTACGACCTGCCTTTATCCAGCGGTTGGCAGCACAGGCGT
CTGACTCAGTCATTCACACATGGGCTCTCTAGGCGGACCTGCCGTTCTTG
TGGA
UFO01780.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vig-RB | 3164 | CG4170-RB | 188..1250 | 8..1030 | 4355 | 96 | Plus |
| vig-RA | 1918 | CG4170-RA | 225..1287 | 8..1030 | 4355 | 96 | Plus |
| vig-RC | 1838 | CG4170-RC | 145..1207 | 8..1030 | 4355 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15066934..15067628 | 702..8 | 3475 | 100 | Minus |
| 2L | 23513712 | 2L | 15065309..15065457 | 846..699 | 695 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:27 has no hits.
UFO01780.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:01 Download gff for
UFO01780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vig-RA | 203..1149 | 8..935 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:58 Download gff for
UFO01780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vig-RC | 145..1091 | 8..935 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:33 Download gff for
UFO01780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vig-RC | 145..1091 | 8..935 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:33 Download gff for
UFO01780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15065223..15065456 | 700..919 | 94 | <- | Minus |
| 2L | 15066937..15067628 | 8..699 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:58 Download gff for
UFO01780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15065223..15065456 | 700..919 | 94 | <- | Minus |
| arm_2L | 15066937..15067628 | 8..699 | 100 | | Minus |
