UFO01783.5prime Sequence
1207 bp (1010 high quality bases) assembled on 2008-10-27
> UFO01783.5prime
CAGTCGACATGGCGCCCACCATATGCTCGGAGAAAAAGCAGCTGCGCGAA
ACGCGGCGACATCATGGCGTGGCCACAGCCGCCATTTCATCAGCATCCGC
AACCGCATCCACCGCATCATCGTCCTCGTCCTTGTCCGTGGGATCCACAT
CTGCAGCTGCCGCCACACAAGCTAGTTCGGTGCTCAACCATGTGGCCAAA
GGTTCGATGAACTCGATGAGCCGCCGTCGACCGGCGCGATTACAGCGCAG
GATGCCTCACATCCTTGCCCGCGTGTCCTCCTTCTCCACGGACACGAGCA
GCGGCGTGGAAACGGAGGTGGAGATGGACTCCGAGCAGAGGATGCAGCTG
GACGACGACCGCTACTCGGATGCCAGGATCCAGGGACTGCAGCAACAGCC
ACATTCCAGCAGCGACAACATCAAGACAGTATTACAGCCGACGACGGCTA
GCGGATATAGTAGCAAGCAGAACCGATCGGCCAGGGCCAAAAACTGTGAT
CGAGAGGTGCCGCTCCAGATAGAGGACGACCACGATGGCGACAGTGGGTA
CGAGTACAGCCAGGATCCCATAAAGGAGCAGCACATGTACCACCAGAATA
GCGAAGGCCTGTTGTCCATTGCCATCAAGACTATCAAGCTGGTGCAGCGC
AACAAGCTGCTGCAAAAGCGATTGGCCCAACTGCAGCTGGAGACCTCGGA
GTTCATTGCCTCGGTGCTGGCCAACCCGGAAAATCGCCAATTCCGTGACA
AAATGTCGCCAAAGGCAGAGGCCAAGGTCAGCAACATGCTGCTGCGCCAC
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCACC
GAGCGTTCTGAACAAATTCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTTCAAGCGAGCTCGAAATCAAATTACGCCCCGCCCTGCCA
CTCTCTTCGCAGTATCTTTTGTAATTTCATTAGCATTCTGGCGCACAATG
GAGGCCACTACAACGGCCATTGATGAACCTTGTAAATGCAGCATCAGACC
TTGGTTCCTGGCTATATATTTGCGCAAGGTGAAAACACGAGGGGCGCGTA
AAGATAA
UFO01783.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31324-RB | 3856 | CG31324-RB | 2002..2793 | 9..800 | 3960 | 100 | Plus |
| CG31324-RA | 1885 | CG31324-RA | 515..1306 | 9..800 | 3960 | 100 | Plus |
| CG31324-RC | 1256 | CG31324-RC | 70..677 | 193..800 | 3040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26129003..26129611 | 192..800 | 3045 | 100 | Plus |
| 3R | 32079331 | 3R | 26124474..26124657 | 9..192 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:53:35 has no hits.
UFO01783.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:09 Download gff for
UFO01783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31324-RA | 512..1314 | 2..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:38 Download gff for
UFO01783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31324-RA | 510..1312 | 2..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:10 Download gff for
UFO01783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31324-RA | 510..1312 | 2..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:10 Download gff for
UFO01783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26124469..26124657 | 2..192 | 97 | -> | Plus |
| 3R | 26129004..26129617 | 193..808 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:38 Download gff for
UFO01783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21950191..21950379 | 2..192 | 97 | -> | Plus |
| arm_3R | 21954726..21955339 | 193..808 | 99 | == | Plus |
