UFO01784.5prime Sequence
1159 bp (1004 high quality bases) assembled on 2008-10-27
> UFO01784.5prime
CAGTCGACATGAGCGATGCAGAGGAAACAAAAGCAGAAGCCACCACCAAA
GTGTTGTTCAAAAAAGCCGGTCGAAAAAACCTAAGGCAACGCAAGAATTC
AGACGAAGAAGAAAAGGAGGAACAATTAACGCTAGATGAGATTAAAGAAC
GCCAGCGCCTCAGGCAGCGACCCAATGGCGTCAGCCTTGTGGGACTGGCG
CTGGGCAAGAAGATCGCGCCAGAAGAGGAGCTGGCCATCAAGGATCCCTT
TAATGTGAAGACCGGTGGTCTGGTCAACATGAAGCAGCTGAAATCGGGCA
AGATGAAGGAGGCGGACGACGCCTACGACGTGGGCATTGGCACGCAGTTC
TCGGCGGAGACGAATAAGCGGGATGAGGACGAGGAGATGATGAAGTACAT
CGAGCAGGAGCTGCAGAAGCGCAAGGGAGGCGGCACGGAGGACGCAGCAG
AGGACGACGGTGATGTAAACAAGTACCTGACCCCCGAGGATGCCGCCCTG
TACGCCCTGCCCGACCACCTGAGGCAGTCTTCCTCGCACAGATCGGAGGA
GATGTTGTCCAACCAGATGCTCAATGGCATTCCTGAAGTGGACCTGGGCA
TTGTGGCCAAGATCCGCAACATAGAGGCCACCGAGGAAGCCAAGCAGAAG
CTGCTGCAGGACGCCAAGAACAAGAAGGACGGACCCTCGCAATTCGTGCC
CACCAACATGGCGGTGAACTTCATGCAACACAATCGATTCAACATCGAGG
ACAACAGCGATCAAAGGAGGCGCAAGCGTGAGGAAAGGGAGGGCAACAAA
TCCGCACAGCATCAGACGAATCCCAATGGAGTCAAGCGAGCCACAGATGA
CTACCATTATGATAGTTTAGGAAGCAGTTCCGCAGATACGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCTGGTCATGACTAGT
GCTGGATTCCCCACATAAAAAACGCCGGCGGCACGGAGCGTTCTGAACAA
TCGATGGGAGTCTGGAGGTCATTTACTGGAATCTATCACAGGGATCAGCG
AACTCGAATTCCAATAGCTCGCCTGCATCATGCGGAACTGTGATTCTTCA
GAGCATCTT
UFO01784.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7974-RB | 1348 | CG7974-RB | 113..995 | 8..889 | 4390 | 99.9 | Plus |
| CG7974-RA | 1137 | CG7974-RA | 113..995 | 8..889 | 4390 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1665421..1666034 | 125..738 | 3070 | 100 | Plus |
| 3L | 28110227 | 3L | 1666090..1666241 | 739..889 | 710 | 99.3 | Plus |
| 3L | 28110227 | 3L | 1665250..1665366 | 8..124 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:40:48 has no hits.
UFO01784.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:07 Download gff for
UFO01784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7974-RA | 108..995 | 8..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:49 Download gff for
UFO01784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7974-RA | 113..1000 | 8..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:34 Download gff for
UFO01784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7974-RA | 113..1000 | 8..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:34 Download gff for
UFO01784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1665250..1665366 | 8..124 | 100 | -> | Plus |
| 3L | 1665421..1666034 | 125..738 | 100 | -> | Plus |
| 3L | 1666090..1666246 | 739..894 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:49 Download gff for
UFO01784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1665250..1665366 | 8..124 | 100 | -> | Plus |
| arm_3L | 1665421..1666034 | 125..738 | 100 | -> | Plus |
| arm_3L | 1666090..1666246 | 739..894 | 98 | == | Plus |
