UFO01786.5prime Sequence
674 bp (347 high quality bases) assembled on 2008-10-27
> UFO01786.5prime
CAGTCGACATGGCGAAGAGCGTGCCACTGACCCAGGCCATTGGTGGTTAC
ATTTTCGGCATTCTCCAGGCCTGCATTCGCTTTGTTTTCCGGCTGATCTA
TGGCCAAAAGGGTGAGAGTGTTCCACCGATCACAGATGCCATTCTCTTGG
AGTCCGCCACATCGTTGGCACGGAAAATCCGCAAACAGGAGCTGAGCAGC
GTCCAGGTCTTGGAATCATTTATCCGGCGCATCAAAGAGGTGAATCCCAT
TCTCAACTGTGTCGTGGATGAACGTTACGATCAAGCCTCTCAAGGAGGCA
GCCGAAGCAGATGCCCTGATCAAGTCTGGACAATACAGCACGGGAGGAGT
GGGAAAAAGGAAAAGCCCTTCCTGGGCGTGGCCATTACCACCAAGGATTG
CTTATCCGTACACAGCATGCTGACACAGCTGGATCCTCCAACTCCGGATG
TGCTTGCTGGCCCGGAATGCGAACCCTTGGGCTTTGATGCCAAGGCGGAA
CCATTCCCATAGCCCCAAAAGGTTCCCAAGGGGGCTGGGGGGGGAAAAAC
AAAAAAACGGGGCCGGGAGGAAAAGGAAGGCCAACAAACTAAACCGCATT
GTCGGGGTCCAGCGGGGGGAAGGTTGCTATAGTCGCGGCGGCTCCCCCTT
TGGTTGGCCCAAAATTGGGGCTCT
UFO01786.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8839-RE | 2071 | CG8839-RE | 199..854 | 9..653 | 2090 | 90 | Plus |
| CG8839-RA | 2082 | CG8839-RA | 210..865 | 9..653 | 2090 | 90 | Plus |
| CG8839-RC | 2143 | CG8839-RC | 271..926 | 9..653 | 2090 | 90 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12341483..12341670 | 196..9 | 925 | 99.5 | Minus |
| 2R | 25286936 | 2R | 12341215..12341431 | 409..190 | 875 | 96.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:34 has no hits.
UFO01786.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:07:58 Download gff for
UFO01786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RD | 259..687 | 1..433 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:55 Download gff for
UFO01786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RC | 265..693 | 1..433 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:13 Download gff for
UFO01786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RC | 265..693 | 1..433 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:13 Download gff for
UFO01786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12341488..12341676 | 1..191 | 97 | | Minus |
| 2R | 12341206..12341429 | 192..420 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:55 Download gff for
UFO01786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8228711..8228934 | 192..420 | 94 | <- | Minus |
| arm_2R | 8228993..8229181 | 1..191 | 97 | | Minus |
