UFO01787.5prime Sequence
1159 bp (958 high quality bases) assembled on 2008-10-27
> UFO01787.5prime
CAGTCGACATGAAGATCGAGGAAGTCAAGAGCACCGTGCGCACCCAACGC
ATCGCAGCCCACAGCCATGTGAAGGGATTGGGCCTGGACGAGGTTGGAGC
TGCCGTGCACAGTGCAGCCGGACTGGTGGGTCAGAAGGCGGCACGCGAGG
CAGCCGGCATTGTGGTGGACCTCATCAAATCGAAAAAGATGGCCGGACGA
GCGCTTCTGCTGGCTGGGCCACCAGGCACGGGCAAAACCGCCATTGCTCT
GGCCATTGCCCAGGAGCTGGGTAACAAAGTGCCCTTCTGTCCCATGGTCG
GATCGGAGGTATTCAGCAATGAGATCAAGAAGACCGAGGTGCTAATGGAG
AATTTCCGGCGCTCCATTGGTCTGCGCATTCGTGAGACCAAAGAGGTGTA
CGAGGGCGAGGTTACGGAACTCACGCCCGTGGAAACCGAGAATCCTATGG
GTGGCTATGGCAAGACTATCAGCAATGTCGTCATCGGCTTGAAAACAGCC
AAGGGAACCAAGCAGCTCAAGCTGGATCCCAGCATCTTTGATGCCTTGCA
AAAGGAAAAGGTGGAGGTGGGCGATGTCATCTACATAGAGGCCAACAGTG
GTGCCGTAAGCGTCAGGGTCGCAGTGACACCTTTGCCACTGAGTTTGATC
TCGAAACCGAGGAGTATGTGCCGCTGCCCAAGGGCGATGTCCACAAGAAG
AAAGAGGTTATCCAGGATGTTACTCTGCACGATCTGGATGTGGCCAATGC
TCGTCCACAGGGCGGCCAGGATGTGCTCTCCATGATGGGCCAGCTTATGA
AGCCGAGAAAACTGAATCACTGACAAACTACGCATGGAGATCAACACGTG
GTAAACAAGTACATTGACCAGGCATAGCCGAGCTGGTTCCCGGAGTTCTC
TTCATCGATGAAATCACATGCTTGATTTGGAGACCTTCACCTACTACACA
GTCCCTGGATCTCCATGCACCATTGTGAATTTTGCACAATCGTGGACGCT
GTGTTATTTCTGGCACACCGACTAGTTCGCCGCACGGAGTCCGCTGAATC
TGCTCGATCGTTGCTGATCATCCGCAACTATCTCTATCATGCGACTTGGA
GGCGATATCAGTGGCCCGACAGACTGACCTGAGAAAGCCACTTACTGTCT
CACGAGAGT
UFO01787.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pont-RA | 1659 | CG4003-RA | 220..1317 | 8..1086 | 4850 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10262342..10263152 | 8..816 | 3940 | 99.6 | Plus |
| 3R | 32079331 | 3R | 10263216..10263341 | 822..944 | 465 | 96.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:40:45 has no hits.
UFO01787.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:07:57 Download gff for
UFO01787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pont-RA | 224..1328 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:46 Download gff for
UFO01787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pont-RA | 213..1317 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:32 Download gff for
UFO01787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pont-RA | 213..1317 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:32 Download gff for
UFO01787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10262335..10263159 | 1..822 | 99 | -> | Plus |
| 3R | 10263217..10263415 | 823..1010 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:46 Download gff for
UFO01787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6088057..6088881 | 1..822 | 99 | -> | Plus |
| arm_3R | 6088939..6089137 | 823..1010 | 92 | -> | Plus |
