UFO01788.5prime Sequence
1155 bp (986 high quality bases) assembled on 2008-10-27
> UFO01788.5prime
CAGTCGACATGAGAGACTCGGCAGCACATGCGAGTCCGGCGGCAGCGGCA
ACGAGCACGCAGAAGTGGATCGTTTGCCGGGTTTGCCTGCAGCAGCCCAA
GGAGCCCATGGCCAGCATTTTCAACGACGATTCGGAAAAGGATCTGACCC
ACATGATTCGCGAGTGCGGCGGAGTGCCCATCAAACAGTTCGATCACTAT
CCGGACAAGATATGCGAGAAGTGCTTCAAGGTGCTGAAAATGGCATTTAA
GTTTCGAGAGACCTGCCAAAGATCGTACGGCCATCTGCGCCAGTTCGTTG
GACCCGTAGAGGTGGAGCAGCGACCACCGGAGAAAAAGGGCTCAGAGACA
GCCACCAAGCTGGAGCCGGATGTCGATCCCGATGAGGCGGAGCAGGAGCC
AGAGCATGACGAGGAAGACGAGGATGTGGACCTGGACGAGAGCCACTATG
CCGAGGCGGACGATGCCGCCGAAACGCAGGGTGGTGTCTTCCATGACGAG
ATTGAGGATGGTATCCTCGTTGAGCTGGAAAAGGATCGGATTGTGCACGT
GAAGAACGAGCAGGTGGAGGAGGACGGCATAATCGAGGAGGTTTATGACG
TGTATGAGACGTACGAGGGCGACCTCATCCCAGATCAGGGCTATGACCAC
GAGATGGCCGATCAAGCCCTGTCCGAGTTATCTGCCGAAATCGAATACCT
GGACCAGGTCGAGCATGATCAGTTGACCGAAAGTGCCCACGAGGATGATG
CGGAAGTCGATCTGAACTCAACCGAAGAGGAGTTCGTTCCCTCAAAAAGC
GTTCGCGCGTCCATCCATGCGCGGATGCCACCAAGCGGAGAGTGAATCCC
CGCAGGTCAGCTACATCGACGGCCTCGTGGCTGTAGATCGAGTACCTCCA
GACACTGACCGCGGCATCCACTTAGTACGGCGGGGTACAGTGATTCGGCT
GGCAGCAATGAGCATCAATCCGAGAGACATCTCGATGCGAGTGCTGGCGC
GCAGCATTCCGCATAAACAGGCGCCACAAGAATCCTCCTTGCGAAAGAAG
GATCAGTACTCTGCAATGTTCTGGGGACATGATCCTCCGAGTTGCCCTAA
CAGACATAGTCATCGCGTACCCCGAGTCGAACTGTGCCATGGTCTGCCCA
GAGGC
UFO01788.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4936-RA | 1824 | CG4936-RA | 118..1187 | 9..1052 | 4710 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20032165..20032952 | 180..958 | 3525 | 98.9 | Plus |
| 3R | 32079331 | 3R | 20031940..20032110 | 9..179 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:02:27 has no hits.
UFO01788.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:07:55 Download gff for
UFO01788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4936-RA | 114..1148 | 1..1017 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:50 Download gff for
UFO01788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4936-RA | 114..1148 | 1..1017 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:09 Download gff for
UFO01788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4936-RA | 111..1145 | 1..1017 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:09 Download gff for
UFO01788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20031933..20032110 | 1..179 | 98 | -> | Plus |
| 3R | 20032165..20033021 | 180..1017 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:50 Download gff for
UFO01788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15857655..15857832 | 1..179 | 98 | -> | Plus |
| arm_3R | 15857887..15858743 | 180..1017 | 97 | | Plus |
