UFO01790.5prime Sequence
1200 bp (993 high quality bases) assembled on 2008-10-27
> UFO01790.5prime
CAGTCGACATGGCCACGGCTGAAGCCCAGATCGGTGTGAACAGGAACTTG
CAGAAGCAGGACCTCAGCAACTTGGACGTCTCTAAACTAACGCCTCTATC
ACCGGAGGTCATCTCCCGACAGGCGACCATCAACATCGGCACCATCGGTC
ATGTGGCTCACGGCAAATCCACGGTGGTCAAAGCCATATCCGGCGTGCAG
ACTGTGCGCTTCAAGAACGAACTGGAGCGCAACATCACAATCAAGCTGGG
TTATGCCAACGCCAAAATCTACAAGTGTGACAACCCCAAGTGCCCGCGCC
CGGCCAGCTTCGTATCGGATGCATCCAGCAAGGACGACAGCTTGCCCTGC
ACTCGGCTCAACTGCTCCGGCAACTTCAGACTGGTGCGACATGTGAGCTT
CGTGGATTGCCCCGGTCACGACATTCTTATGGCTACCATGTTGAACGGTG
CTGCTGTGATGGACGCTGCTCTGCTGCTCATTGCTGGCAATGAATCCTGT
CCACAACCGCAAACCTCTGAGCATTTGGCCGCCATTGAGATTATGAAGCT
GAAACAGATTCTGATCTTGCAAAACAAGATCGATCTGATCAAGGAGAGCC
AGGCGAAAGAGCAGTACGAGGAGATCACCAAATTCGTCCAGGGCACCGTA
GCTGAGGGCGCTCCGATCATTCCGATCTCGGCCCAGCTTAAGTACAACAT
CGATGTGCTCTGCGAGTACATTGTGAACAAGATACCAGTGCCGCCGCGTG
ACTTCAATGCCCCGCCCCGTCTGATCGTCATCCGATCCTTCGACGTGAAC
AAGCCAGGCTGTGAGGTGGCAGACCTTAAGGGCGGTGTGGCCGGTGGCTC
CATTCTGAGCGGCGTGCTGAAGTAGGCCAAGAGATCGAGGTGCGTCCGGC
GTTGTGACCAAGATAGCGATGGCAACATCACCTGCCGTCCAATCTTCTCC
CGTATCGTCTCGCTCTTCGCCGAACAGAATGAGCTGCAGTACGCGTGCCG
GCGGTTCTGATTGGTGTTGGGCACCCAAAATCGATTCTACGCCTGGTGCC
AGGCGATCGTTTTGGGTCGTCAGGTGCTAGGGCCGTTGCAGCTGCCGACA
TCTACACAGACTGATCCGGATAATCTGGTGGCTCCTCCGGATCTGTTACC
ATGGACAAAGAACGAGCATTGAACTCGCAGAACACAAATCCCTTGTTGGT
UFO01790.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-2gamma-RD | 2062 | CG43665-RD | 110..1212 | 7..1105 | 5060 | 98 | Plus |
| eIF-2gamma-RB | 1922 | CG43665-RB | 110..1212 | 7..1105 | 5060 | 98 | Plus |
| eIF-2gamma-RC | 1886 | CG43665-RC | 141..1176 | 74..1105 | 4725 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15258849..15259388 | 1017..482 | 2425 | 98.3 | Minus |
| 3R | 32079331 | 3R | 15259449..15259687 | 487..249 | 1195 | 100 | Minus |
| 3R | 32079331 | 3R | 15262545..15262722 | 251..74 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 15263281..15263349 | 75..7 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:53:24 has no hits.
UFO01790.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:07:54 Download gff for
UFO01790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-9-RB | 121..1140 | 1..1017 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:27 Download gff for
UFO01790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2gamma-RB | 105..1124 | 1..1017 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:01 Download gff for
UFO01790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2gamma-RB | 105..1124 | 1..1017 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:01 Download gff for
UFO01790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15258849..15259383 | 487..1017 | 98 | <- | Minus |
| 3R | 15259450..15259686 | 250..486 | 100 | <- | Minus |
| 3R | 15262547..15262721 | 75..249 | 100 | <- | Minus |
| 3R | 15263282..15263354 | 1..74 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:27 Download gff for
UFO01790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11085172..11085408 | 250..486 | 100 | <- | Minus |
| arm_3R | 11088269..11088443 | 75..249 | 100 | <- | Minus |
| arm_3R | 11089004..11089076 | 1..74 | 97 | | Minus |
| arm_3R | 11084571..11085105 | 487..1017 | 98 | <- | Minus |
